# RGB color definition. Colors are refered to within configuration files
# by their name. In order to use a color, you must define it here. 
#
# Common colors (red, green, blue, etc) are already defined in 7
# tones, based on 7 color Brewer palettes, where available.
#
# vvlHUE (very very light HUE, e.g. vvlred)
# vlHUE (very light HUE, e.g. vlred)
# lHUE  (light HUE, e.g. red)
# HUE   (e.g. red)
# dHUE  (dark HUE, e.g. dred)
# vdHUE (very dark HUE, e.g. vdred))
# vvdHUE (very very dark HUE, e.g. vvdred))
#
# Boutique colors are not. If you really must use 'bisque', then add
#
# bisque = 255,228,196
#
# See colors.unixnames.txt for a large number of named color definitions.
#
# In addition to hues, two other color groups are defined. 
#
# - cytogenetic band colors (e.g. gposNNN, acen, stalk, etc.) which
#   correspond to colors on ideogram bands
# - UCSC chromosome color palette (e.g. chrNN, chrUn, chrNA)
#     - included from ucsc.conf
# 
# Another useful list of colors is in brewer.conf, which defines
# Brewer Palettes (www.colorbrewer.org), and corresponding lists.
#
# 
# 

white     = 255,255,255
vvvvlgrey = greys-9-seq-1
vvvlgrey  = greys-9-seq-1
vvlgrey   = greys-9-seq-2
vlgrey    = greys-9-seq-3
lgrey     = greys-9-seq-4
grey      = greys-9-seq-5
dgrey     = greys-9-seq-6
vdgrey    = greys-9-seq-7
vvdgrey   = greys-9-seq-8
vvvdgrey  = greys-9-seq-9
vvvvdgrey = greys-9-seq-9
black     = 0,0,0

vvlred  = reds-7-seq-1
vlred   = reds-7-seq-2
lred    = reds-7-seq-3
red     = reds-7-seq-4
dred    = reds-7-seq-5
vdred   = reds-7-seq-6
vvdred  = reds-7-seq-7

vvlgreen = greens-7-seq-1
vlgreen  = greens-7-seq-2
lgreen   = greens-7-seq-3
green    = greens-7-seq-4
dgreen   = greens-7-seq-5
vdgreen  = greens-7-seq-6
vvdgreen = greens-7-seq-7

vvlblue = blues-7-seq-1
vlblue  = blues-7-seq-2
lblue   = blues-7-seq-3
blue    = blues-7-seq-4
dblue   = blues-7-seq-5
vdblue  = blues-7-seq-6
vvdblue = blues-7-seq-7

vvlpurple = purples-7-seq-1
vlpurple  = purples-7-seq-2
lpurple   = purples-7-seq-3
purple    = purples-7-seq-4
dpurple   = purples-7-seq-5
vdpurple  = purples-7-seq-6
vvdpurple = purples-7-seq-7

vvlorange = oranges-7-seq-1
vlorange  = oranges-7-seq-2
lorange   = oranges-7-seq-3
orange    = oranges-7-seq-4
dorange   = oranges-7-seq-5
vdorange  = oranges-7-seq-6
vvdorange = oranges-7-seq-7

# there is no sequential yellow Brewer palette - these
# are therefore based on CMYK ladder
vvlyellow = 255,252,213
vlyellow  = 255,249,174 
lyellow   = 255,246,133 
yellow    = 255,244,80
dyellow   = 255,242,0
vdyellow  = 227,210,0
vvdyellow = 193,180,0

# chromosome color map (UCSC) 

<<include colors.ucsc.conf>>
<<include colors.hsv.conf>>

