{
    "test_choose_ctl.se_ta_rep1" : "chip-seq-pipeline-test-data/input/se/tas/rep1/rep1.subsampled.25.merged.nodup.tagAlign.gz",
    "test_choose_ctl.se_ta_rep2" : "chip-seq-pipeline-test-data/input/se/tas/rep2/rep2.subsampled.20.merged.nodup.tagAlign.gz",
    "test_choose_ctl.se_ta_pooled" : "chip-seq-pipeline-test-data/input/se/tas/pooled_rep/rep1.subsampled.25.merged.nodup.pooled.tagAlign.gz",
    "test_choose_ctl.se_ctl_ta_rep1" : "chip-seq-pipeline-test-data/input/se/tas/ctl1_fake_doubled/ctl1.double.tagAlign.gz",
    "test_choose_ctl.se_ctl_ta_rep2" : "chip-seq-pipeline-test-data/input/se/tas/ctl2_fake_doubled/ctl2.double.tagAlign.gz",
    "test_choose_ctl.se_ctl_ta_pooled" : "chip-seq-pipeline-test-data/input/se/tas/pooled_ctl_fake_doubled/ctl_pooled.double.tagnAlign.gz",

    "test_choose_ctl.ref_se_choose_ctl_idx1" : 0,
    "test_choose_ctl.ref_se_choose_ctl_idx2" : 1,
    "test_choose_ctl.ref_se_choose_ctl_sub1" : 0,
    "test_choose_ctl.ref_se_choose_ctl_sub2" : 46249,
    "test_choose_ctl.ref_se_choose_ctl_sub_pooled" : 93085,

    "test_choose_ctl.ref_se_choose_ctl_always_use_pooled_ctl_idx1" : -1,
    "test_choose_ctl.ref_se_choose_ctl_always_use_pooled_ctl_idx2" : -1,
    "test_choose_ctl.ref_se_choose_ctl_always_use_pooled_ctl_sub1" : 46836,
    "test_choose_ctl.ref_se_choose_ctl_always_use_pooled_ctl_sub2" : 46249,
    "test_choose_ctl.ref_se_choose_ctl_always_use_pooled_ctl_sub_pooled" : 93085,

    "test_choose_ctl.ref_se_choose_ctl_single_rep_idx1" : 0,
    "test_choose_ctl.ref_se_choose_ctl_single_rep_sub1" : 46836,
    "test_choose_ctl.ref_se_choose_ctl_single_rep_sub_pooled" : 46836,

    "test_choose_ctl.ref_se_choose_ctl_single_ctl_idx1" : 0,
    "test_choose_ctl.ref_se_choose_ctl_single_ctl_idx2" : 0,
    "test_choose_ctl.ref_se_choose_ctl_single_ctl_sub1" : 0,
    "test_choose_ctl.ref_se_choose_ctl_single_ctl_sub2" : 46249,
    "test_choose_ctl.ref_se_choose_ctl_single_ctl_sub_pooled" : 0,

    "test_choose_ctl.ref_se_choose_ctl_disabled_idx1" : 0,
    "test_choose_ctl.ref_se_choose_ctl_disabled_idx2" : 1,
    "test_choose_ctl.ref_se_choose_ctl_disabled_sub1" : 0,
    "test_choose_ctl.ref_se_choose_ctl_disabled_sub2" : 0,
    "test_choose_ctl.ref_se_choose_ctl_disabled_sub_pooled" : 0,

    "test_choose_ctl.ref_se_choose_ctl_ctl_depth_limit_only_idx1" : 0,
    "test_choose_ctl.ref_se_choose_ctl_ctl_depth_limit_only_idx2" : 1,
    "test_choose_ctl.ref_se_choose_ctl_ctl_depth_limit_only_sub1" : 45000,
    "test_choose_ctl.ref_se_choose_ctl_ctl_depth_limit_only_sub2" : 45000,
    "test_choose_ctl.ref_se_choose_ctl_ctl_depth_limit_only_sub_pooled" : 45000,

    "test_choose_ctl.ref_se_choose_ctl_exp_ctl_depth_ratio_limit_only_idx1" : 0,
    "test_choose_ctl.ref_se_choose_ctl_exp_ctl_depth_ratio_limit_only_idx2" : 1,
    "test_choose_ctl.ref_se_choose_ctl_exp_ctl_depth_ratio_limit_only_sub1" : 0,
    "test_choose_ctl.ref_se_choose_ctl_exp_ctl_depth_ratio_limit_only_sub2" : 46249,
    "test_choose_ctl.ref_se_choose_ctl_exp_ctl_depth_ratio_limit_only_sub_pooled" : 93085,

    "test_choose_ctl.ctl_depth_ratio" : 1.5,
    "test_choose_ctl.ctl_depth_limit" : 45000,
    "test_choose_ctl.exp_ctl_depth_ratio_limit" : 1.5
}