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| Name | Last modified | Size | Description |
|---|---|---|---|---|
| Parent Directory | - | ||
| AUTHORS | 2014-02-14 00:41 | 670 | |
| LICENSE | 2014-02-14 00:41 | 5.1K | |
| MANUAL | 2014-07-23 23:42 | 68K | |
| MANUAL.markdown | 2014-07-23 22:19 | 79K | |
| Makefile | 2014-09-30 22:39 | 9.6K | |
| NEWS | 2014-09-30 20:05 | 32K | |
| SeqAn-1.1/ | 2014-09-10 18:10 | - | |
| TUTORIAL | 2014-02-14 00:41 | 6.1K | |
| VERSION | 2014-09-30 19:51 | 6 | |
| aligner.h | 2014-07-19 03:24 | 64K | |
| aligner_0mm.h | 2014-07-19 03:24 | 11K | |
| aligner_1mm.h | 2014-07-19 03:24 | 15K | |
| aligner_23mm.h | 2014-07-19 03:24 | 24K | |
| aligner_metrics.h | 2014-06-04 22:12 | 10K | |
| aligner_seed_mm.h | 2014-02-14 00:41 | 52K | |
| alphabet.cpp | 2014-02-14 00:41 | 11K | |
| alphabet.h | 2014-06-04 22:12 | 5.6K | |
| annot.cpp | 2014-07-19 03:24 | 535 | |
| annot.h | 2014-07-19 03:24 | 1.1K | |
| assert_helpers.h | 2014-02-14 00:41 | 8.6K | |
| auto_array.h | 2014-02-14 00:41 | 605 | |
| binary_sa_search.h | 2014-07-19 03:24 | 2.8K | |
| bitpack.h | 2014-02-14 00:41 | 785 | |
| bitset.h | 2014-02-14 00:41 | 11K | |
| blockwise_sa.h | 2014-07-19 03:24 | 29K | |
| bowtie | 2014-07-19 03:24 | 2.2K | |
| bowtie-align-l | 2014-11-05 00:06 | 747K | |
| bowtie-align-s | 2014-11-05 00:05 | 745K | |
| bowtie-build | 2014-07-19 03:24 | 2.7K | |
| bowtie-build-l | 2014-11-05 00:04 | 318K | |
| bowtie-build-s | 2014-11-05 00:04 | 322K | |
| bowtie-buildc | 2018-09-05 11:57 | 3.0K | |
| bowtie-inspect | 2014-07-19 03:24 | 2.3K | |
| bowtie-inspect-l | 2014-11-05 00:07 | 243K | |
| bowtie-inspect-s | 2014-11-05 00:06 | 239K | |
| bowtie_build_main.cpp | 2014-07-19 03:24 | 1.4K | |
| bowtie_inspect.cpp | 2014-07-19 03:24 | 15K | |
| bowtie_main.cpp | 2014-07-19 03:24 | 1.4K | |
| btypes.h | 2014-07-19 03:24 | 627 | |
| ccnt_lut.cpp | 2014-02-14 00:41 | 13K | |
| chaincat.cpp | 2014-06-04 22:12 | 638 | |
| color.cpp | 2014-06-04 22:12 | 2.0K | |
| color.h | 2014-06-04 22:12 | 404 | |
| color_dec.cpp | 2014-07-19 03:24 | 9.0K | |
| color_dec.h | 2014-02-14 00:41 | 1.0K | |
| diff_sample.h | 2014-07-19 03:24 | 30K | |
| doc/ | 2014-09-30 22:52 | - | |
| ebwt.cpp | 2014-07-19 03:24 | 1.9K | |
| ebwt.h | 2014-07-19 03:24 | 151K | |
| ebwt_build.cpp | 2014-07-19 03:24 | 23K | |
| ebwt_search.cpp | 2014-07-19 03:24 | 104K | |
| ebwt_search_backtrack.h | 2014-07-19 03:24 | 102K | |
| ebwt_search_util.cpp | 2014-06-04 22:12 | 1.1K | |
| ebwt_search_util.h | 2014-07-19 03:24 | 12K | |
| edit.cpp | 2014-06-04 22:12 | 236 | |
| edit.h | 2014-02-14 00:41 | 1.8K | |
| endian_swap.h | 2014-07-19 03:24 | 2.9K | |
| fast_mutex.h | 2014-02-14 00:41 | 6.8K | |
| filebuf.h | 2014-07-19 03:24 | 12K | |
| formats.h | 2014-02-14 00:41 | 1.0K | |
| genomes/ | 2014-09-30 22:52 | - | |
| hit.cpp | 2014-07-19 03:24 | 8.8K | |
| hit.h | 2014-07-19 03:24 | 48K | |
| hit_set.cpp | 2014-06-04 22:12 | 1.9K | |
| hit_set.h | 2014-07-19 03:24 | 9.4K | |
| indexes/ | 2014-09-30 22:52 | - | |
| log.cpp | 2014-02-14 00:41 | 54 | |
| log.h | 2014-07-19 03:24 | 421 | |
| mm.h | 2014-07-19 03:24 | 453 | |
| multikey_qsort.h | 2014-07-19 03:24 | 35K | |
| pat.cpp | 2014-06-04 22:12 | 4.0K | |
| pat.h | 2014-07-19 03:24 | 86K | |
| pool.h | 2014-02-14 00:41 | 8.4K | |
| processor_support.h | 2014-02-14 00:41 | 2.2K | |
| qual.cpp | 2014-02-14 00:41 | 3.2K | |
| qual.h | 2014-06-04 22:12 | 5.2K | |
| random_source.h | 2014-07-19 03:24 | 1.4K | |
| random_test.cpp | 2014-06-04 22:12 | 933 | |
| range.h | 2014-07-19 03:24 | 1.0K | |
| range_cache.h | 2014-07-19 03:24 | 15K | |
| range_chaser.h | 2014-07-19 03:24 | 7.3K | |
| range_source.h | 2014-07-19 03:24 | 69K | |
| reads/ | 2014-09-30 22:52 | - | |
| ref_aligner.cpp | 2014-02-14 00:41 | 1.4K | |
| ref_aligner.h | 2014-07-19 03:24 | 157K | |
| ref_read.cpp | 2014-07-19 03:24 | 8.5K | |
| ref_read.h | 2014-07-19 04:22 | 7.6K | |
| reference.h | 2014-09-10 21:17 | 23K | |
| refmap.cpp | 2014-07-19 03:24 | 1.4K | |
| refmap.h | 2014-07-19 03:24 | 1.1K | |
| row_chaser.h | 2014-07-19 03:24 | 4.6K | |
| sam.cpp | 2014-07-19 03:24 | 11K | |
| sam.h | 2014-07-19 03:24 | 4.9K | |
| scripts/ | 2014-09-30 22:52 | - | |
| search_1mm_phase1.c | 2014-02-14 00:41 | 1.6K | |
| search_1mm_phase2.c | 2014-02-14 00:41 | 878 | |
| search_23mm_phase1.c | 2014-02-14 00:41 | 1.3K | |
| search_23mm_phase2.c | 2014-02-14 00:41 | 1.1K | |
| search_23mm_phase3.c | 2014-02-14 00:41 | 1.7K | |
| search_exact.c | 2014-07-19 03:24 | 746 | |
| search_globals.h | 2014-02-14 00:41 | 470 | |
| search_seeded_phase1.c | 2014-02-14 00:41 | 2.3K | |
| search_seeded_phase2.c | 2014-02-14 00:41 | 2.9K | |
| search_seeded_phase3.c | 2014-02-14 00:41 | 4.3K | |
| search_seeded_phase4.c | 2014-02-14 00:41 | 2.8K | |
| sequence_io.h | 2014-02-14 00:41 | 5.3K | |
| shmem.cpp | 2014-06-04 22:12 | 691 | |
| shmem.h | 2014-07-19 03:24 | 4.2K | |
| str_util.h | 2014-02-14 00:41 | 414 | |
| third_party/ | 2014-09-30 22:52 | - | |
| threading.h | 2014-02-14 00:41 | 647 | |
| timer.h | 2014-07-19 03:24 | 1.6K | |
| tinythread.cpp | 2014-02-14 00:41 | 8.3K | |
| tinythread.h | 2014-02-14 00:41 | 21K | |
| tokenize.h | 2014-06-04 22:12 | 1.1K | |
| word_io.h | 2014-07-19 04:24 | 2.5K | |
| zbox.h | 2014-07-19 03:24 | 1.9K | |