Index of /kundaje/marinovg/oak/various/programs/bowtie-1.0.1+hamrhein_nh_patch

	Name	Last modified	Size	Description
	Parent Directory		-
	AUTHORS	2013-06-05 17:36	670
	LICENSE	2013-06-05 17:36	5.1K
	MANUAL	2014-03-19 15:33	68K
	MANUAL.markdown	2013-06-05 17:36	79K
	Makefile	2014-04-28 18:56	8.3K
	NEWS	2014-03-18 15:15	31K
	SeqAn-1.1/	2015-08-07 08:15	-
	TUTORIAL	2013-06-05 17:36	6.1K
	VERSION	2014-03-18 15:15	6
	aligner.h	2013-06-05 17:36	63K
	aligner_0mm.h	2013-06-05 17:36	11K
	aligner_1mm.h	2013-06-05 17:36	15K
	aligner_23mm.h	2013-06-05 17:36	24K
	aligner_metrics.h	2013-06-05 17:36	10K
	aligner_seed_mm.h	2013-06-05 17:36	52K
	alphabet.cpp	2013-06-05 17:36	11K
	alphabet.h	2013-06-05 17:36	5.6K
	annot.cpp	2013-06-05 17:36	537
	annot.h	2013-06-05 17:36	1.1K
	assert_helpers.h	2013-06-05 17:36	8.6K
	auto_array.h	2013-06-05 17:36	605
	binary_sa_search.h	2014-03-18 15:15	2.6K
	bitpack.h	2013-06-05 17:36	785
	bitset.h	2013-06-05 17:36	11K
	blockwise_sa.h	2014-03-18 15:15	29K
	bowtie	2015-01-22 10:36	734K
	bowtie-build	2015-01-22 10:35	312K
	bowtie-inspect	2015-01-22 10:36	257K
	bowtie_build_main.cpp	2013-06-05 17:36	1.4K
	bowtie_inspect.cpp	2014-03-18 15:15	15K
	bowtie_main.cpp	2013-07-03 15:32	1.3K
	ccnt_lut.cpp	2013-06-05 17:36	13K
	chaincat.cpp	2013-06-05 17:36	638
	color.cpp	2013-06-05 17:36	2.0K
	color.h	2013-06-05 17:36	404
	color_dec.cpp	2013-06-05 17:36	9.0K
	color_dec.h	2013-06-05 17:36	1.0K
	diff_sample.h	2013-06-05 17:36	29K
	doc/	2015-08-07 08:13	-
	ebwt.cpp	2013-06-05 17:36	1.7K
	ebwt.h	2014-01-14 20:53	149K
	ebwt_build.cpp	2014-03-18 15:15	22K
	ebwt_search.cpp	2014-04-27 17:04	104K
	ebwt_search_backtrack.h	2013-06-05 17:36	102K
	ebwt_search_util.cpp	2013-06-05 17:36	1.1K
	ebwt_search_util.h	2013-06-05 17:36	12K
	edit.cpp	2013-06-05 17:36	236
	edit.h	2013-06-05 17:36	1.8K
	endian_swap.h	2014-03-18 15:15	1.9K
	fast_mutex.h	2013-06-05 17:36	6.8K
	filebuf.h	2013-06-05 17:36	12K
	formats.h	2013-06-05 17:36	1.0K
	genomes/	2015-08-07 08:14	-
	hit.cpp	2013-06-05 17:36	8.6K
	hit.h	2014-03-19 15:07	48K
	hit_set.cpp	2013-06-05 17:36	1.9K
	hit_set.h	2013-06-05 17:36	9.4K
	indexes/	2015-08-07 08:14	-
	log.cpp	2013-06-05 17:36	54
	log.h	2014-03-19 15:07	459
	mm.h	2013-06-05 17:36	722
	multikey_qsort.h	2013-06-05 17:36	36K
	pat.cpp	2013-06-05 17:36	4.0K
	pat.h	2013-07-03 15:33	86K
	pool.h	2013-06-05 17:36	8.4K
	processor_support.h	2014-01-14 21:05	2.2K
	qual.cpp	2013-06-05 17:36	3.2K
	qual.h	2013-06-05 17:36	5.2K
	random_source.h	2013-06-05 17:36	1.1K
	random_test.cpp	2013-06-05 17:36	933
	range.h	2013-06-05 17:36	1.0K
	range_cache.h	2013-06-05 17:36	15K
	range_chaser.h	2013-06-05 17:36	7.4K
	range_source.h	2013-06-05 17:36	69K
	reads/	2015-08-07 08:14	-
	ref_aligner.cpp	2013-06-05 17:36	1.4K
	ref_aligner.h	2013-06-05 17:36	156K
	ref_read.cpp	2014-03-18 15:15	8.2K
	ref_read.h	2013-06-05 17:36	7.1K
	reference.h	2013-06-05 17:36	23K
	refmap.cpp	2013-06-05 17:36	1.4K
	refmap.h	2013-06-05 17:36	1.1K
	row_chaser.h	2013-06-05 17:36	4.5K
	sam.cpp	2014-04-27 17:07	11K
	sam.h	2014-04-27 17:22	5.0K
	scripts/	2015-08-07 08:14	-
	search_1mm_phase1.c	2013-06-05 17:36	1.6K
	search_1mm_phase2.c	2013-06-05 17:36	878
	search_23mm_phase1.c	2013-06-05 17:36	1.3K
	search_23mm_phase2.c	2013-06-05 17:36	1.1K
	search_23mm_phase3.c	2013-06-05 17:36	1.7K
	search_exact.c	2013-06-05 17:36	736
	search_globals.h	2013-06-05 17:36	470
	search_seeded_phase1.c	2013-06-05 17:36	2.3K
	search_seeded_phase2.c	2013-06-05 17:36	2.9K
	search_seeded_phase3.c	2013-06-05 17:36	4.3K
	search_seeded_phase4.c	2013-06-05 17:36	2.8K
	sequence_io.h	2013-06-05 17:36	5.3K
	shmem.cpp	2013-06-05 17:36	691
	shmem.h	2013-06-05 17:36	4.1K
	str_util.h	2013-06-05 17:36	414
	third_party/	2015-08-07 08:15	-
	threading.h	2013-06-05 17:36	647
	timer.h	2013-06-05 17:36	1.6K
	tinythread.cpp	2013-06-05 17:36	8.3K
	tinythread.h	2013-06-05 17:36	21K
	tokenize.h	2013-06-05 17:36	1.1K
	word_io.h	2014-03-18 15:15	2.8K
	zbox.h	2013-06-05 17:36	1.9K