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| Name | Last modified | Size | Description |
|---|---|---|---|---|
| Parent Directory | - | ||
| AUTHORS | 2009-12-12 16:29 | 703 | |
| COPYING | 2008-08-13 19:00 | 5.1K | |
| MANUAL | 2012-12-15 17:53 | 68K | |
| MANUAL.markdown | 2012-12-06 22:24 | 79K | |
| Makefile | 2012-12-15 05:15 | 7.4K | |
| NEWS | 2012-12-15 17:50 | 30K | |
| SeqAn-1.1/ | 2013-03-27 19:40 | - | |
| TUTORIAL | 2009-10-06 00:55 | 6.1K | |
| VERSION | 2012-12-15 05:07 | 6 | |
| aligner.h | 2012-05-07 05:12 | 63K | |
| aligner_0mm.h | 2009-12-05 19:52 | 11K | |
| aligner_1mm.h | 2009-12-05 19:52 | 15K | |
| aligner_23mm.h | 2009-12-05 19:52 | 24K | |
| aligner_metrics.h | 2009-03-29 17:54 | 10K | |
| aligner_seed_mm.h | 2009-12-05 19:52 | 52K | |
| alphabet.cpp | 2009-12-11 00:16 | 11K | |
| alphabet.h | 2012-12-15 04:20 | 5.6K | |
| annot.cpp | 2009-09-25 17:09 | 537 | |
| annot.h | 2009-08-04 18:01 | 1.1K | |
| assert_helpers.h | 2010-08-27 23:42 | 8.6K | |
| auto_array.h | 2009-10-21 21:16 | 605 | |
| binary_sa_search.h | 2009-03-13 17:54 | 2.6K | |
| bitpack.h | 2008-08-13 21:32 | 785 | |
| bitset.h | 2009-12-07 00:23 | 11K | |
| blockwise_sa.h | 2012-12-15 04:34 | 29K | |
| bowtie | 2013-03-27 19:41 | 674K | |
| bowtie-build | 2013-03-27 19:40 | 291K | |
| bowtie-inspect | 2013-03-27 19:41 | 227K | |
| bowtie_build_main.cpp | 2009-10-04 18:32 | 1.4K | |
| bowtie_inspect.cpp | 2010-09-04 03:19 | 15K | |
| bowtie_main.cpp | 2009-10-04 18:32 | 1.3K | |
| ccnt_lut.cpp | 2009-06-02 15:44 | 13K | |
| chaincat.cpp | 2009-09-09 00:18 | 638 | |
| color.cpp | 2009-11-24 22:53 | 2.0K | |
| color.h | 2009-11-24 22:53 | 404 | |
| color_dec.cpp | 2012-12-15 04:45 | 9.0K | |
| color_dec.h | 2009-11-24 22:53 | 1.0K | |
| diff_sample.h | 2009-10-13 00:09 | 29K | |
| doc/ | 2013-03-27 19:40 | - | |
| ebwt.cpp | 2009-10-04 18:32 | 1.7K | |
| ebwt.h | 2012-12-15 04:38 | 146K | |
| ebwt_build.cpp | 2012-12-16 03:49 | 22K | |
| ebwt_search.cpp | 2012-12-16 20:53 | 107K | |
| ebwt_search_backtrack.h | 2012-12-15 04:33 | 102K | |
| ebwt_search_util.cpp | 2009-11-24 22:53 | 1.1K | |
| ebwt_search_util.h | 2009-11-24 22:53 | 12K | |
| edit.cpp | 2009-10-19 17:32 | 236 | |
| edit.h | 2009-10-19 17:32 | 1.8K | |
| endian_swap.h | 2008-08-13 21:50 | 1.9K | |
| filebuf.h | 2010-04-10 17:48 | 11K | |
| formats.h | 2010-02-01 16:58 | 1.0K | |
| genomes/ | 2013-03-27 19:40 | - | |
| hit.cpp | 2012-12-15 04:01 | 8.6K | |
| hit.h | 2012-12-15 04:01 | 48K | |
| hit_set.cpp | 2009-11-24 22:53 | 1.9K | |
| hit_set.h | 2009-10-19 17:32 | 9.4K | |
| indexes/ | 2013-03-27 19:40 | - | |
| log.cpp | 2009-05-08 22:52 | 54 | |
| log.h | 2009-05-08 23:18 | 434 | |
| mm.h | 2009-09-18 15:47 | 722 | |
| multikey_qsort.h | 2009-03-13 17:53 | 36K | |
| pat.cpp | 2010-08-27 20:17 | 4.0K | |
| pat.h | 2012-05-07 05:12 | 87K | |
| pool.h | 2010-04-05 22:16 | 8.4K | |
| qual.cpp | 2009-05-06 02:08 | 3.2K | |
| qual.h | 2009-09-25 17:09 | 5.2K | |
| random_source.h | 2009-12-11 21:36 | 1.1K | |
| random_test.cpp | 2009-12-11 21:36 | 933 | |
| range.h | 2009-07-17 03:18 | 1.0K | |
| range_cache.h | 2009-09-25 17:09 | 15K | |
| range_chaser.h | 2009-04-04 22:38 | 7.4K | |
| range_source.h | 2010-02-02 00:38 | 69K | |
| reads/ | 2013-03-27 19:40 | - | |
| ref_aligner.cpp | 2009-02-09 23:36 | 1.4K | |
| ref_aligner.h | 2009-12-11 00:16 | 156K | |
| ref_read.cpp | 2012-12-15 04:45 | 8.2K | |
| ref_read.h | 2010-09-04 03:19 | 7.1K | |
| reference.h | 2010-09-04 06:19 | 23K | |
| refmap.cpp | 2009-09-25 17:09 | 1.4K | |
| refmap.h | 2009-09-03 23:04 | 1.1K | |
| row_chaser.h | 2009-06-12 06:33 | 4.5K | |
| sam.cpp | 2012-12-15 17:43 | 11K | |
| sam.h | 2012-12-15 17:44 | 4.9K | |
| scripts/ | 2013-03-27 19:40 | - | |
| search_1mm_phase1.c | 2009-11-26 05:06 | 1.6K | |
| search_1mm_phase2.c | 2009-11-26 05:06 | 878 | |
| search_23mm_phase1.c | 2009-11-26 05:06 | 1.3K | |
| search_23mm_phase2.c | 2009-11-26 05:06 | 1.1K | |
| search_23mm_phase3.c | 2012-12-15 04:42 | 1.7K | |
| search_exact.c | 2009-11-26 05:06 | 736 | |
| search_globals.h | 2012-05-07 05:12 | 470 | |
| search_seeded_phase1.c | 2009-11-26 05:06 | 2.3K | |
| search_seeded_phase2.c | 2009-11-26 05:06 | 2.9K | |
| search_seeded_phase3.c | 2012-12-15 04:43 | 4.3K | |
| search_seeded_phase4.c | 2012-12-15 04:43 | 2.8K | |
| sequence_io.h | 2009-09-25 17:09 | 5.3K | |
| shmem.cpp | 2009-09-02 23:00 | 691 | |
| shmem.h | 2009-11-24 23:44 | 4.1K | |
| spinlock.h | 2008-12-06 23:49 | 3.1K | |
| str_util.h | 2009-08-15 16:31 | 414 | |
| test-ce10/ | 2013-03-27 19:44 | - | |
| threading.h | 2010-04-05 22:16 | 1.8K | |
| timer.h | 2009-07-26 05:58 | 1.6K | |
| tokenize.h | 2010-06-06 17:36 | 1.1K | |
| word_io.h | 2009-06-24 03:41 | 2.8K | |
| zbox.h | 2008-06-27 21:01 | 1.9K | |