mappy==2.17
toml==0.10.0
tqdm==4.31.1
numpy<=1.18.5
torch>=1.1.0,<=1.5
optuna==1.1.0
parasail==1.2
seqdist==0.0.1
requests==2.22.0
crf-beam==0.0.1a0
ont-fast5-api==3.1.6
fast-ctc-decode==0.2.5
#bonito-cuda-runtime==0.0.2a2
#pyclaragenomics-cuda-10-0==0.4.2