LOCUS       KF527485                1444 bp    cRNA    linear   VRL 02-OCT-2013
DEFINITION  Influenza A virus (A/California/07/2009(H1N1)) segment 5
            nucleocapsid protein (NP) gene, partial cds.
ACCESSION   KF527485
VERSION     KF527485.1  GI:537446968
KEYWORDS    .
SOURCE      Influenza A virus (A/California/07/2009(H1N1))
  ORGANISM  Influenza A virus (A/California/07/2009(H1N1))
            Viruses; ssRNA negative-strand viruses; Orthomyxoviridae;
            Influenzavirus A.
REFERENCE   1  (bases 1 to 1444)
  AUTHORS   Le,V.L., Courtney,C.L., Steel,J. and Compans,R.W.
  TITLE     Closely Related Influenza Viruses Induce Contrasting Respiratory
            Tract Immunopathology
  JOURNAL   PLoS ONE 8 (9), E76708 (2013)
   PUBMED   24086762
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1444)
  AUTHORS   Le,V.L., Courtney,C.L., Steel,J. and Compans,R.W.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2013) Microbiology and Immunology, Emory
            University, 1518 Clifton Rd Suite 5000, Atlanta, GA 30322, USA
COMMENT     ##Assembly-Data-START##
            Assembly Method       :: Lasergene v. 10
            Sequencing Technology :: ABI37XL; Sanger dideoxy sequencing
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1444
                     /organism="Influenza A virus (A/California/07/2009(H1N1))"
                     /mol_type="viral cRNA"
                     /strain="A/California/07/2009"
                     /serotype="H1N1"
                     /host="Homo sapiens"
                     /db_xref="taxon:641809"
                     /segment="5"
                     /country="USA"
                     /collection_date="09-Apr-2009"
                     /note="passage details: MDCK 6"
     gene            <1..>1444
                     /gene="NP"
     CDS             <1..>1444
                     /gene="NP"
                     /codon_start=2
                     /product="nucleocapsid protein"
                     /protein_id="AGU69828.1"
                     /db_xref="GI:537446969"
                     /translation="ASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCT
                     ELKLSDYDGRLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVGGK
                     WMRELILYDKEEIRRVWRQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDP
                     RMCSLMQGSTLPRRSGAAGAAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTRVAY
                     ERMCNILKGKFQTAAQRAMMDQVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLP
                     ACVYGLAVASGHDFEREGYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHS
                     AAFEDLRVSSFIRGKKVIPRGKLSTRGVQIASNENVETMDSNTLELRSRYWAIRTRSG
                     GNTNQQKASAGQISVQPTFSVQRNLPFERATVMAAFSGNNEGRTSDMRTEVIRMMESA
                     KPEDLSFQGRGVFELSDEKATNPIVPSFDMS"
ORIGIN      
        1 ggcgtctcaa ggcaccaaac gatcatatga acaaatggag actggtgggg agcgccagga
       61 tgccacagaa atcagagcat ctgtcggaag aatgattggt ggaatcggga gattctacat
      121 ccaaatgtgc actgaactca aactcagtga ttatgatgga cgactaatcc agaatagcat
      181 aacaatagag aggatggtgc tttctgcttt tgatgagaga agaaataaat acctagaaga
      241 gcatcccagt gctgggaagg accctaagaa aacaggagga cccatatata gaagagtagg
      301 cggaaagtgg atgagagaac tcatccttta tgacaaagaa gaaataagga gagtttggcg
      361 ccaagcaaac aatggcgaag atgcaacagc aggtcttact catatcatga tttggcattc
      421 caacctgaat gatgccacat atcagagaac aagagcgctt gttcgcaccg gaatggatcc
      481 cagaatgtgc tctctaatgc aaggttcaac acttcccaga aggtctggtg ccgcaggtgc
      541 tgcggtgaaa ggagttggaa caatagcaat ggagttaatc agaatgatca aacgtggaat
      601 caatgaccga aatttctgga ggggtgaaaa tggacgaagg acaagggttg cttatgaaag
      661 aatgtgcaat atcctcaaag gaaaatttca aacagctgcc cagagggcaa tgatggatca
      721 agtaagagaa agtcgaaacc caggaaacgc tgagattgaa gacctcattt tcctggcacg
      781 gtcagcactc attctgaggg gatcagttgc acataaatcc tgcctgcctg cttgtgtgta
      841 tgggcttgca gtagcaagtg ggcatgactt tgaaagggaa gggtactcac tggtcgggat
      901 agacccattc aaattactcc aaaacagcca agtggtcagc ctgatgagac caaatgaaaa
      961 cccagctcac aagagtcaat tggtgtggat ggcatgccac tctgctgcat ttgaagattt
     1021 aagagtatca agtttcataa gaggaaagaa agtgattcca agaggaaagc tttccacaag
     1081 aggggtccag attgcttcaa atgagaatgt ggaaaccatg gactccaata ccctggaact
     1141 gagaagcaga tactgggcca taaggaccag gagtggagga aataccaatc aacaaaaggc
     1201 atccgcaggc cagatcagtg tgcagcctac attctcagtg cagcggaatc tcccttttga
     1261 aagagcaacc gttatggcag cattcagcgg gaacaatgaa ggacggacat ccgacatgcg
     1321 aacagaagtt ataagaatga tggaaagtgc aaagccagaa gatttgtcct tccaggggcg
     1381 gggagtcttc gagctctcgg acgaaaaggc aacgaacccg atcgtgcctt cctttgacat
     1441 gagt
//