blastn BLASTN 2.9.0+ Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. GPIPE/10090/current/all_top_level GPIPE/10090/current/rna 10 2 -3 5 2 R -d repeatmasker/repeat_9989;m;F; G26684.1 human STS STS_D11570, sequence tagged site 285 1 gi|372099107|ref|NC_000069.6| NC_000069 10090 Mus musculus 160039680 1 40.9604 44 0.375311 30 134 166 Plus 101449177 101449144 Minus 34 1 GAATCCTAGAGGCTTGATTGGCCCAGG-CTGCTG GAATCCTAGAGGCTGGACTGGCCCTGGCCTGCTG |||||||||||||| || |||||| || |||||| 2 gi|372099103|ref|NC_000073.6| NC_000073 10090 Mus musculus 145441459 1 40.9604 44 0.375311 26 205 233 Plus 131772185 131772157 Minus 29 0 GAAAGGAAATNAAAATGGAAAGTTCTTGT GAAAGGAAAAAAAAATGGAAAGTTCTGGT ||||||||| ||||||||||||||| || 3 gi|372099106|ref|NC_000070.6| NC_000070 10090 Mus musculus 156508116 1 40.0587 43 1.30996 23 62 85 Plus 9607562 9607539 Minus 24 0 CCAACACAGGCCAGCGACTTCTGG CCAACACAGGCCAGCGGCTTCTGG |||||||||||||||| ||||||| 2 37.3537 40 4.57222 28 242 272 Plus 142902532 142902563 Plus 32 1 GCCTGACATGG-GTAGCTGCTCAATAAATGCT GCCTGGCATGAAGTAACTGCTCAATAAATGCT ||||| |||| ||| |||||||||||||||| 4 gi|372099108|ref|NC_000068.7| NC_000068 10090 Mus musculus 182113224 1 39.157 42 1.30996 27 239 269 Plus 3799647 3799677 Plus 31 0 AAGGCCTGACATGGGTAGCTGCTCAATAAAT AAGTCCTGGCATGAGTAGTTGCTCAATAAAT ||| |||| |||| |||| |||||||||||| 2 38.2554 41 4.57222 23 211 235 Plus 70278960 70278984 Plus 25 0 AAATNAAAATGGAAAGTTCTTGTAG AAATGAAAATGGAAAGTTCTTATAG |||| |||||||||||||||| ||| 5 gi|372099097|ref|NC_000079.6| NC_000079 10090 Mus musculus 120421639 1 39.157 42 1.30996 25 207 234 Plus 26806584 26806557 Minus 28 0 AAGGAAATNAAAATGGAAAGTTCTTGTA AAGGACATCAAAATGGAAAGTTCTTCTA ||||| || |||||||||||||||| || 2 37.3537 40 4.57222 32 234 273 Plus 56840340 56840301 Minus 40 0 AGCGCAAGGCCTGACATGGGTAGCTGCTCAATAAATGCTA AGCGCAAGGCCTGACATAGGAAAATGTTCAGTGAATACTA ||||||||||||||||| || | || ||| | ||| ||| 6 gi|372099098|ref|NC_000078.6| NC_000078 10090 Mus musculus 120129022 1 38.2554 41 4.57222 22 49 71 Plus 113030663 113030685 Plus 23 0 CATCCATTCACACCCAACACAGG CATCCATTCACACCCAGCACAGG |||||||||||||||| |||||| 2 37.3537 40 4.57222 28 231 262 Plus 108990272 108990242 Minus 32 1 TGTAGCGCAAGGCCTGACATGGGTAGCTGCTC TGTAGCTCTAGGCCTGACATGGGT-GCTGGTC |||||| | ||||||||||||||| |||| || 7 gi|372099109|ref|NC_000067.6| NC_000067 10090 Mus musculus 195471971 1 37.3537 40 4.57222 35 87 129 Plus 65190108 65190148 Plus 43 2 GCTCAGCCACAGACATGGTTTGTNACTNTTGAGCTTCTGTTCC GCTCAGCCACATACATGGTTT-TAAGTGTTGAGGCTCT-TTCC ||||||||||| ||||||||| | | | ||||| ||| |||| 8 gi|372099101|ref|NC_000075.6| NC_000075 10090 Mus musculus 124595110 1 37.3537 40 4.57222 36 238 284 Plus 58227241 58227195 Minus 47 0 CAAGGCCTGACATGGGTAGCTGCTCAATAAATGCTAGTNTGTTATTT CAAAGCCTGACAGGTATGACTGCTCAATAAATACTATTTTTTTTTTT ||| |||||||| | | ||||||||||||| ||| | | || ||| 9 gi|372099100|ref|NC_000076.6| NC_000076 10090 Mus musculus 130694993 1 37.3537 40 4.57222 20 255 274 Plus 119337186 119337205 Plus 20 0 AGCTGCTCAATAAATGCTAG AGCTGCTCAATAAATGCTAG |||||||||||||||||||| 10 gi|372099094|ref|NC_000082.6| NC_000082 10090 Mus musculus 98207768 1 37.3537 40 4.57222 43 175 228 Plus 18854780 18854835 Plus 56 2 GGAGGCAAAGAATCCCTACCTCCT-AGGGGTGA-AAGGAAATNAAAATGGAAAGTT GGAGGCAAAGAATCCCTACATTGTGACAGCTGATAAAGAAGGTAAAATGGAAAATT ||||||||||||||||||| | | | | ||| || ||| |||||||||| || 107382 3164670549 31 802980793578 0.41 0.625 0.78