blastn BLASTN 2.9.0+ Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. GPIPE/10090/current/all_top_level GPIPE/10090/current/rna G26684.1 human STS STS_D11570, sequence tagged site 285 10 2 -3 5 2 R -d repeatmasker/repeat_9989;m;F; 1 G26684.1 human STS STS_D11570, sequence tagged site 285 1 gi|372099107|ref|NC_000069.6| Mus musculus strain C57BL/6J chromosome 3, GRCm38.p4 C57BL/6J NC_000069 160039680 1 40.9604 44 0.375311 134 166 101449177 101449144 1 -1 30 30 1 34 GAATCCTAGAGGCTTGATTGGCCCAGG-CTGCTG GAATCCTAGAGGCTGGACTGGCCCTGGCCTGCTG |||||||||||||| || |||||| || |||||| 2 gi|372099103|ref|NC_000073.6| Mus musculus strain C57BL/6J chromosome 7, GRCm38.p4 C57BL/6J NC_000073 145441459 1 40.9604 44 0.375311 205 233 131772185 131772157 1 -1 26 26 0 29 GAAAGGAAATNAAAATGGAAAGTTCTTGT GAAAGGAAAAAAAAATGGAAAGTTCTGGT ||||||||| ||||||||||||||| || 3 gi|372099106|ref|NC_000070.6| Mus musculus strain C57BL/6J chromosome 4, GRCm38.p4 C57BL/6J NC_000070 156508116 1 40.0587 43 1.30996 62 85 9607562 9607539 1 -1 23 23 0 24 CCAACACAGGCCAGCGACTTCTGG CCAACACAGGCCAGCGGCTTCTGG |||||||||||||||| ||||||| 2 37.3537 40 4.57222 242 272 142902532 142902563 1 1 28 28 1 32 GCCTGACATGG-GTAGCTGCTCAATAAATGCT GCCTGGCATGAAGTAACTGCTCAATAAATGCT ||||| |||| ||| |||||||||||||||| 4 gi|372099108|ref|NC_000068.7| Mus musculus strain C57BL/6J chromosome 2, GRCm38.p4 C57BL/6J NC_000068 182113224 1 39.157 42 1.30996 239 269 3799647 3799677 1 1 27 27 0 31 AAGGCCTGACATGGGTAGCTGCTCAATAAAT AAGTCCTGGCATGAGTAGTTGCTCAATAAAT ||| |||| |||| |||| |||||||||||| 2 38.2554 41 4.57222 211 235 70278960 70278984 1 1 23 23 0 25 AAATNAAAATGGAAAGTTCTTGTAG AAATGAAAATGGAAAGTTCTTATAG |||| |||||||||||||||| ||| 5 gi|372099097|ref|NC_000079.6| Mus musculus strain C57BL/6J chromosome 13, GRCm38.p4 C57BL/6J NC_000079 120421639 1 39.157 42 1.30996 207 234 26806584 26806557 1 -1 25 25 0 28 AAGGAAATNAAAATGGAAAGTTCTTGTA AAGGACATCAAAATGGAAAGTTCTTCTA ||||| || |||||||||||||||| || 2 37.3537 40 4.57222 234 273 56840340 56840301 1 -1 32 32 0 40 AGCGCAAGGCCTGACATGGGTAGCTGCTCAATAAATGCTA AGCGCAAGGCCTGACATAGGAAAATGTTCAGTGAATACTA ||||||||||||||||| || | || ||| | ||| ||| 6 gi|372099098|ref|NC_000078.6| Mus musculus strain C57BL/6J chromosome 12, GRCm38.p4 C57BL/6J NC_000078 120129022 1 38.2554 41 4.57222 49 71 113030663 113030685 1 1 22 22 0 23 CATCCATTCACACCCAACACAGG CATCCATTCACACCCAGCACAGG |||||||||||||||| |||||| 2 37.3537 40 4.57222 231 262 108990272 108990242 1 -1 28 28 1 32 TGTAGCGCAAGGCCTGACATGGGTAGCTGCTC TGTAGCTCTAGGCCTGACATGGGT-GCTGGTC |||||| | ||||||||||||||| |||| || 7 gi|372099109|ref|NC_000067.6| Mus musculus strain C57BL/6J chromosome 1, GRCm38.p4 C57BL/6J NC_000067 195471971 1 37.3537 40 4.57222 87 129 65190108 65190148 1 1 35 35 2 43 GCTCAGCCACAGACATGGTTTGTNACTNTTGAGCTTCTGTTCC GCTCAGCCACATACATGGTTT-TAAGTGTTGAGGCTCT-TTCC ||||||||||| ||||||||| | | | ||||| ||| |||| 8 gi|372099101|ref|NC_000075.6| Mus musculus strain C57BL/6J chromosome 9, GRCm38.p4 C57BL/6J NC_000075 124595110 1 37.3537 40 4.57222 238 284 58227241 58227195 1 -1 36 36 0 47 CAAGGCCTGACATGGGTAGCTGCTCAATAAATGCTAGTNTGTTATTT CAAAGCCTGACAGGTATGACTGCTCAATAAATACTATTTTTTTTTTT ||| |||||||| | | ||||||||||||| ||| | | || ||| 9 gi|372099100|ref|NC_000076.6| Mus musculus strain C57BL/6J chromosome 10, GRCm38.p4 C57BL/6J NC_000076 130694993 1 37.3537 40 4.57222 255 274 119337186 119337205 1 1 20 20 0 20 AGCTGCTCAATAAATGCTAG AGCTGCTCAATAAATGCTAG |||||||||||||||||||| 10 gi|372099094|ref|NC_000082.6| Mus musculus strain C57BL/6J chromosome 16, GRCm38.p4 C57BL/6J NC_000082 98207768 1 37.3537 40 4.57222 175 228 18854780 18854835 1 1 43 43 2 56 GGAGGCAAAGAATCCCTACCTCCT-AGGGGTGA-AAGGAAATNAAAATGGAAAGTT GGAGGCAAAGAATCCCTACATTGTGACAGCTGATAAAGAAGGTAAAATGGAAAATT ||||||||||||||||||| | | | | ||| || ||| |||||||||| || 107382 3164670549 0 0 0.41 0.625 0.78