<!-- ============================================
     ::DATATOOL:: Generated from "seqsplit.asn"
     ::DATATOOL:: by application DATATOOL version 2.0.0
     ::DATATOOL:: on 08/02/2010 23:05:14
     ============================================ -->

<!-- ============================================ -->
<!-- This section is mapped from module "NCBI-Seq-split"
================================================= -->

<!--
$Revision: 181438 $
********************************************************************

  Network Id server network access
  Vasilchenko 2003


*********************************************************************

  seqsplit.asn

     representation of split sequences

*********************************************************************
-->

<!-- Elements used by other modules:
          ID2S-Chunk-Id,
          ID2S-Seq-annot-Info -->

<!-- Elements referenced from other modules:
          Seq-id FROM NCBI-Seqloc,
          Seq-entry FROM NCBI-Seqset,
          Bioseq,
          Seq-annot,
          Seq-descr,
          Seq-literal FROM NCBI-Sequence,
          Seq-align FROM NCBI-Seqalign,
          Feat-id FROM NCBI-Seqfeat -->
<!-- ============================================ -->

<!--


 Blob split info types


 Chunks split description
-->
<!ELEMENT ID2S-Split-Info (
        ID2S-Split-Info_bioseqs-info?, 
        ID2S-Split-Info_chunks, 
        ID2S-Split-Info_skeleton?)>

<!ELEMENT ID2S-Split-Info_bioseqs-info (ID2S-Bioseqs-Info*)>

<!ELEMENT ID2S-Split-Info_chunks (ID2S-Chunk-Info*)>

<!ELEMENT ID2S-Split-Info_skeleton (Seq-entry)>


<!ELEMENT ID2S-Bioseqs-Info (
        ID2S-Bioseqs-Info_info, 
        ID2S-Bioseqs-Info_bioseqs)>

<!ELEMENT ID2S-Bioseqs-Info_info (ID2S-Bioseq-Info)>

<!ELEMENT ID2S-Bioseqs-Info_bioseqs (ID2S-Bioseq-Ids)>


<!ELEMENT ID2S-Bioseq-Info (
        ID2S-Bioseq-Info_gap-count?, 
        ID2S-Bioseq-Info_seq-map-has-ref?)>

<!ELEMENT ID2S-Bioseq-Info_gap-count (%INTEGER;)>

<!ELEMENT ID2S-Bioseq-Info_seq-map-has-ref EMPTY>
<!ATTLIST ID2S-Bioseq-Info_seq-map-has-ref value ( true | false ) #REQUIRED >


<!ELEMENT ID2S-Chunk-Info (
        ID2S-Chunk-Info_id, 
        ID2S-Chunk-Info_content)>
<!--


 utility types


-->
<!ELEMENT ID2S-Chunk-Info_id (ID2S-Chunk-Id)>

<!ELEMENT ID2S-Chunk-Info_content (ID2S-Chunk-Content*)>

<!--
 Description of information in this chunk
 Place means id of Bioseq or Bioseq-set
-->
<!ELEMENT ID2S-Chunk-Content (
        ID2S-Chunk-Content_seq-descr | 
        ID2S-Chunk-Content_seq-annot | 
        ID2S-Chunk-Content_seq-assembly | 
        ID2S-Chunk-Content_seq-map | 
        ID2S-Chunk-Content_seq-data | 
        ID2S-Chunk-Content_seq-annot-place | 
        ID2S-Chunk-Content_bioseq-place | 
        ID2S-Chunk-Content_feat-ids)>

<!-- place of Seq-descrs -->
<!ELEMENT ID2S-Chunk-Content_seq-descr (ID2S-Seq-descr-Info)>

<!-- locations and types of annotations -->
<!ELEMENT ID2S-Chunk-Content_seq-annot (ID2S-Seq-annot-Info)>

<!-- place of assembly history -->
<!ELEMENT ID2S-Chunk-Content_seq-assembly (ID2S-Seq-assembly-Info)>

<!-- place of sequence map -->
<!ELEMENT ID2S-Chunk-Content_seq-map (ID2S-Seq-map-Info)>

<!-- place of sequence data -->
<!ELEMENT ID2S-Chunk-Content_seq-data (ID2S-Seq-data-Info)>

<!-- place of Seq-annots -->
<!ELEMENT ID2S-Chunk-Content_seq-annot-place (ID2S-Seq-annot-place-Info)>

<!-- place of Bioseqs -->
<!ELEMENT ID2S-Chunk-Content_bioseq-place (ID2S-Bioseq-place-Info*)>

<!-- ids of features -->
<!ELEMENT ID2S-Chunk-Content_feat-ids (ID2S-Seq-feat-Ids-Info*)>


<!ELEMENT ID2S-Seq-descr-Info (
        ID2S-Seq-descr-Info_type-mask, 
        ID2S-Seq-descr-Info_bioseqs?, 
        ID2S-Seq-descr-Info_bioseq-sets?)>

<!-- mask of Seq-descr types, -->
<!ELEMENT ID2S-Seq-descr-Info_type-mask (%INTEGER;)>

<!ELEMENT ID2S-Seq-descr-Info_bioseqs (ID2S-Bioseq-Ids)>

<!ELEMENT ID2S-Seq-descr-Info_bioseq-sets (ID2S-Bioseq-set-Ids)>


<!ELEMENT ID2S-Seq-annot-Info (
        ID2S-Seq-annot-Info_name?, 
        ID2S-Seq-annot-Info_align?, 
        ID2S-Seq-annot-Info_graph?, 
        ID2S-Seq-annot-Info_feat?, 
        ID2S-Seq-annot-Info_seq-loc?)>

<!--
 name is set if this is named annot
 name may be empty which differ from unnamed annot
-->
<!ELEMENT ID2S-Seq-annot-Info_name (#PCDATA)>

<!ELEMENT ID2S-Seq-annot-Info_align EMPTY>

<!ELEMENT ID2S-Seq-annot-Info_graph EMPTY>

<!ELEMENT ID2S-Seq-annot-Info_feat (ID2S-Feat-type-Info*)>
<!--
 ID2S-Seq-loc is used to represent unordered and unstranded
 set of intervals on set of sequences.
 It's optimized for compact encoding of several common cases:
    Seq-ids of type gi,
    intervals covering whole sequences,
    whole sequences with sequential gis,
    set of intervals on the same sequence (Seq-id sharing).
-->
<!ELEMENT ID2S-Seq-annot-Info_seq-loc (ID2S-Seq-loc)>


<!ELEMENT ID2S-Seq-annot-place-Info (
        ID2S-Seq-annot-place-Info_name?, 
        ID2S-Seq-annot-place-Info_bioseqs?, 
        ID2S-Seq-annot-place-Info_bioseq-sets?)>

<!ELEMENT ID2S-Seq-annot-place-Info_name (#PCDATA)>

<!ELEMENT ID2S-Seq-annot-place-Info_bioseqs (ID2S-Bioseq-Ids)>

<!ELEMENT ID2S-Seq-annot-place-Info_bioseq-sets (ID2S-Bioseq-set-Ids)>


<!ELEMENT ID2S-Seq-feat-Ids-Info (
        ID2S-Seq-feat-Ids-Info_feat-types?, 
        ID2S-Seq-feat-Ids-Info_xref-types?, 
        ID2S-Seq-feat-Ids-Info_local-ids?, 
        ID2S-Seq-feat-Ids-Info_local-str-ids?)>

<!ELEMENT ID2S-Seq-feat-Ids-Info_feat-types (ID2S-Feat-type-Info*)>

<!ELEMENT ID2S-Seq-feat-Ids-Info_xref-types (ID2S-Feat-type-Info*)>

<!ELEMENT ID2S-Seq-feat-Ids-Info_local-ids (ID2S-Seq-feat-Ids-Info_local-ids_E*)>


<!ELEMENT ID2S-Seq-feat-Ids-Info_local-ids_E (%INTEGER;)>

<!ELEMENT ID2S-Seq-feat-Ids-Info_local-str-ids (ID2S-Seq-feat-Ids-Info_local-str-ids_E*)>


<!ELEMENT ID2S-Seq-feat-Ids-Info_local-str-ids_E (#PCDATA)>


<!ELEMENT ID2S-Feat-type-Info (
        ID2S-Feat-type-Info_type, 
        ID2S-Feat-type-Info_subtypes?)>

<!ELEMENT ID2S-Feat-type-Info_type (%INTEGER;)>

<!ELEMENT ID2S-Feat-type-Info_subtypes (ID2S-Feat-type-Info_subtypes_E*)>


<!ELEMENT ID2S-Feat-type-Info_subtypes_E (%INTEGER;)>


<!ELEMENT ID2S-Seq-assembly-Info (
        ID2S-Seq-assembly-Info_bioseqs)>

<!ELEMENT ID2S-Seq-assembly-Info_bioseqs (ID2S-Bioseq-Ids)>


<!ELEMENT ID2S-Seq-map-Info (ID2S-Seq-loc)>


<!ELEMENT ID2S-Seq-data-Info (ID2S-Seq-loc)>


<!ELEMENT ID2S-Bioseq-place-Info (
        ID2S-Bioseq-place-Info_bioseq-set, 
        ID2S-Bioseq-place-Info_seq-ids)>

<!ELEMENT ID2S-Bioseq-place-Info_bioseq-set (%INTEGER;)>

<!ELEMENT ID2S-Bioseq-place-Info_seq-ids (ID2S-Bioseq-Ids)>


<!ELEMENT ID2S-Chunk (
        ID2S-Chunk_data)>

<!ELEMENT ID2S-Chunk_data (ID2S-Chunk-Data*)>


<!ELEMENT ID2S-Chunk-Data (
        ID2S-Chunk-Data_id, 
        ID2S-Chunk-Data_descr?, 
        ID2S-Chunk-Data_annots?, 
        ID2S-Chunk-Data_assembly?, 
        ID2S-Chunk-Data_seq-map?, 
        ID2S-Chunk-Data_seq-data?, 
        ID2S-Chunk-Data_bioseqs?)>
<!-- place of data to insert -->
<!ELEMENT ID2S-Chunk-Data_id (
        ID2S-Chunk-Data_id_bioseq-set | 
        ID2S-Chunk-Data_id_gi | 
        ID2S-Chunk-Data_id_seq-id)>

<!-- Bioseq-set id -->
<!ELEMENT ID2S-Chunk-Data_id_bioseq-set (%INTEGER;)>

<!-- Bioseq id -->
<!ELEMENT ID2S-Chunk-Data_id_gi (%INTEGER;)>

<!-- Bioseq id -->
<!ELEMENT ID2S-Chunk-Data_id_seq-id (Seq-id)>

<!-- Seq-descr, for Bioseq and Bioseq-set -->
<!ELEMENT ID2S-Chunk-Data_descr (Seq-descr)>

<!-- Seq-annot, for Bioseq and Bioseq-set -->
<!ELEMENT ID2S-Chunk-Data_annots (Seq-annot*)>

<!-- assembly history Seq-align, for Bioseq -->
<!ELEMENT ID2S-Chunk-Data_assembly (Seq-align*)>

<!-- sequence map, for Bioseq -->
<!ELEMENT ID2S-Chunk-Data_seq-map (ID2S-Sequence-Piece*)>

<!-- sequence data, for Bioseq -->
<!ELEMENT ID2S-Chunk-Data_seq-data (ID2S-Sequence-Piece*)>

<!-- Bioseq, for Bioseq-set -->
<!ELEMENT ID2S-Chunk-Data_bioseqs (Bioseq*)>


<!ELEMENT ID2S-Sequence-Piece (
        ID2S-Sequence-Piece_start, 
        ID2S-Sequence-Piece_data)>

<!-- start position on sequence -->
<!ELEMENT ID2S-Sequence-Piece_start (%INTEGER;)>

<!ELEMENT ID2S-Sequence-Piece_data (Seq-literal*)>

<!--


 utility types


-->
<!ELEMENT ID2S-Chunk-Id (%INTEGER;)>


<!ELEMENT ID2S-Bioseq-set-Ids (ID2S-Bioseq-set-Ids_E*)>


<!ELEMENT ID2S-Bioseq-set-Ids_E (%INTEGER;)>


<!ELEMENT ID2S-Bioseq-Ids (ID2S-Bioseq-Ids_E*)>


<!ELEMENT ID2S-Bioseq-Ids_E (
        ID2S-Bioseq-Ids_E_gi | 
        ID2S-Bioseq-Ids_E_seq-id | 
        ID2S-Bioseq-Ids_E_gi-range)>

<!ELEMENT ID2S-Bioseq-Ids_E_gi (%INTEGER;)>

<!ELEMENT ID2S-Bioseq-Ids_E_seq-id (Seq-id)>

<!ELEMENT ID2S-Bioseq-Ids_E_gi-range (ID2S-Gi-Range)>


<!ELEMENT ID2S-Gi-Range (
        ID2S-Gi-Range_start, 
        ID2S-Gi-Range_count?)>

<!-- start gi in this gi range -->
<!ELEMENT ID2S-Gi-Range_start (%INTEGER;)>

<!-- number of sequential gis -->
<!ELEMENT ID2S-Gi-Range_count (%INTEGER;)>

<!--
 ID2S-Seq-loc is used to represent unordered and unstranded
 set of intervals on set of sequences.
 It's optimized for compact encoding of several common cases:
    Seq-ids of type gi,
    intervals covering whole sequences,
    whole sequences with sequential gis,
    set of intervals on the same sequence (Seq-id sharing).
-->
<!ELEMENT ID2S-Seq-loc (
        ID2S-Seq-loc_whole-gi | 
        ID2S-Seq-loc_whole-seq-id | 
        ID2S-Seq-loc_whole-gi-range | 
        ID2S-Seq-loc_gi-interval | 
        ID2S-Seq-loc_seq-id-interval | 
        ID2S-Seq-loc_gi-ints | 
        ID2S-Seq-loc_seq-id-ints | 
        ID2S-Seq-loc_loc-set)>

<!-- whole sequence by gi -->
<!ELEMENT ID2S-Seq-loc_whole-gi (%INTEGER;)>

<!-- whole sequence by Seq-id -->
<!ELEMENT ID2S-Seq-loc_whole-seq-id (Seq-id)>

<!-- set of whole sequences by gis -->
<!ELEMENT ID2S-Seq-loc_whole-gi-range (ID2S-Gi-Range)>

<!-- interval on sequence by gi -->
<!ELEMENT ID2S-Seq-loc_gi-interval (ID2S-Gi-Interval)>

<!-- interval on sequence by Seq-id -->
<!ELEMENT ID2S-Seq-loc_seq-id-interval (ID2S-Seq-id-Interval)>

<!-- set of intervals on the same gi -->
<!ELEMENT ID2S-Seq-loc_gi-ints (ID2S-Gi-Ints)>

<!-- set of intervals on the same id -->
<!ELEMENT ID2S-Seq-loc_seq-id-ints (ID2S-Seq-id-Ints)>

<!-- combination of locations -->
<!ELEMENT ID2S-Seq-loc_loc-set (ID2S-Seq-loc*)>


<!ELEMENT ID2S-Gi-Interval (
        ID2S-Gi-Interval_gi, 
        ID2S-Gi-Interval_start, 
        ID2S-Gi-Interval_length?)>

<!ELEMENT ID2S-Gi-Interval_gi (%INTEGER;)>

<!ELEMENT ID2S-Gi-Interval_start (%INTEGER;)>

<!ELEMENT ID2S-Gi-Interval_length (%INTEGER;)>


<!ELEMENT ID2S-Seq-id-Interval (
        ID2S-Seq-id-Interval_seq-id, 
        ID2S-Seq-id-Interval_start, 
        ID2S-Seq-id-Interval_length?)>

<!ELEMENT ID2S-Seq-id-Interval_seq-id (Seq-id)>

<!ELEMENT ID2S-Seq-id-Interval_start (%INTEGER;)>

<!ELEMENT ID2S-Seq-id-Interval_length (%INTEGER;)>


<!ELEMENT ID2S-Interval (
        ID2S-Interval_start, 
        ID2S-Interval_length?)>

<!ELEMENT ID2S-Interval_start (%INTEGER;)>

<!ELEMENT ID2S-Interval_length (%INTEGER;)>


<!ELEMENT ID2S-Gi-Ints (
        ID2S-Gi-Ints_gi, 
        ID2S-Gi-Ints_ints)>

<!ELEMENT ID2S-Gi-Ints_gi (%INTEGER;)>

<!ELEMENT ID2S-Gi-Ints_ints (ID2S-Interval*)>


<!ELEMENT ID2S-Seq-id-Ints (
        ID2S-Seq-id-Ints_seq-id, 
        ID2S-Seq-id-Ints_ints)>

<!ELEMENT ID2S-Seq-id-Ints_seq-id (Seq-id)>

<!ELEMENT ID2S-Seq-id-Ints_ints (ID2S-Interval*)>