ó
,È/Ic           @   sH   d  d l  m Z d Z d Z d e f d „  ƒ  YZ d „  Z d „  Z d S(	   iÿÿÿÿ(   t   Alphabeti   i   t	   FreqTablec           B   s&   e  Z d  „  Z d „  Z d d „ Z RS(   c         C   s]   d } x! |  j  j ƒ  D] } | | } q Wx, |  j  j ƒ  D] } |  j  | | |  | <q: Wd  S(   Ng        (   t   countt   valuest   keys(   t   selft   sumt   i(    (    sˆ   /oak/stanford/groups/akundaje/marinovg/programs/biopython-1.50.tar.gz/biopython-1.50/build/lib.linux-x86_64-2.7/Bio/SubsMat/FreqTable.pyt   _freq_from_count3   s
    c         C   s;   d } |  j  ƒ  } | j ƒ  x | D] } | | } q# W| S(   Nt    (   R   t   sort(   R   t   st   letters_listR   (    (    sˆ   /oak/stanford/groups/akundaje/marinovg/programs/biopython-1.50.tar.gz/biopython-1.50/build/lib.linux-x86_64-2.7/Bio/SubsMat/FreqTable.pyt   _alphabet_from_input:   s    
c         C   sŠ   | |  _  | t k r+ | |  _ |  j ƒ  n1 | t k rP i  |  _ |  j | ƒ n t d ƒ ‚ | s† t j ƒ  |  _  |  j ƒ  |  j  _	 n  d  S(   Ns   bad dict_type(
   t   alphabett   COUNTR   R   t   FREQt   updatet
   ValueErrorR    R   t   letters(   R   t   in_dictt	   dict_typeR   (    (    sˆ   /oak/stanford/groups/akundaje/marinovg/programs/biopython-1.50.tar.gz/biopython-1.50/build/lib.linux-x86_64-2.7/Bio/SubsMat/FreqTable.pyt   __init__B   s    			N(   t   __name__t
   __module__R   R   t   NoneR   (    (    (    sˆ   /oak/stanford/groups/akundaje/marinovg/programs/biopython-1.50.tar.gz/biopython-1.50/build/lib.linux-x86_64-2.7/Bio/SubsMat/FreqTable.pyR   1   s   		c         C   sR   i  } x6 |  D]. } | j  ƒ  j ƒ  \ } } t | ƒ | | <q Wt | t ƒ } | S(   N(   t   stript   splitt   intR   R   (   t   fR   t   linet   keyt   valuet
   freq_table(    (    sˆ   /oak/stanford/groups/akundaje/marinovg/programs/biopython-1.50.tar.gz/biopython-1.50/build/lib.linux-x86_64-2.7/Bio/SubsMat/FreqTable.pyt
   read_countP   s    c         C   sL   i  } x6 |  D]. } | j  ƒ  j ƒ  \ } } t | ƒ | | <q Wt | t ƒ S(   N(   R   R   t   floatR   R   (   R   t	   freq_dictR   R   R    (    (    sˆ   /oak/stanford/groups/akundaje/marinovg/programs/biopython-1.50.tar.gz/biopython-1.50/build/lib.linux-x86_64-2.7/Bio/SubsMat/FreqTable.pyt	   read_freqX   s
    N(   t   BioR    R   R   t   dictR   R"   R%   (    (    (    sˆ   /oak/stanford/groups/akundaje/marinovg/programs/biopython-1.50.tar.gz/biopython-1.50/build/lib.linux-x86_64-2.7/Bio/SubsMat/FreqTable.pyt   <module>   s
   .	