ó ä¸WHc@sêdZddlmZddlZd„ZedkrædGHdZddlZejj eƒsldeGHqæe eƒZ ee ƒZ xRe D]JZ e jGHe jGHe jd GHee jd ƒGHe jjƒd d GHq‹We jƒndS( sôBio.SeqIO support for the "swiss" (aka SwissProt/UniProt) file format. You are expected to use this module via the Bio.SeqIO functions. See also the Bio.SwissProt module which offers more than just accessing the sequences as SeqRecord objects.iÿÿÿÿ(tSProtNccsytjƒ}g}x`|D]X}|j|ƒ|d dkrtjdj|ƒƒ}|j|ƒ}g}|VqqWdS(sBreaks up a Swiss-Prot/UniProt file into SeqRecord objects. Every section from the ID line to the terminating // becomes a single SeqRecord with associated annotation and features. This parser is for the flat file "swiss" format as used by: * Swiss-Prot aka SwissProt * TrEMBL * UniProtKB aka UniProt Knowledgebase It does NOT read their new XML file format. http://www.expasy.org/sprot/ For consistency with BioPerl and EMBOSS we call this the "swiss" format. is//tN(RtSequenceParsertappendt cStringIOtStringIOtjointparse(thandletparsertlinestlinetrecord((s„/oak/stanford/groups/akundaje/marinovg/programs/biopython-1.50.tar.gz/biopython-1.50/build/lib.linux-x86_64-2.7/Bio/SeqIO/SwissIO.pyt SwissIterators   t__main__sQuick self test...s../../Tests/SwissProt/sp008sMissing test file %stkeywordstorganismis...(t__doc__t Bio.SwissProtRRR t__name__texample_filenametostpathtisfiletopenRtrecordsR tnametidt annotationstreprtseqttostringtclose(((s„/oak/stanford/groups/akundaje/marinovg/programs/biopython-1.50.tar.gz/biopython-1.50/build/lib.linux-x86_64-2.7/Bio/SeqIO/SwissIO.pyt s$