ó
$<ïHc           @   sG   d  d l  Z  d  d l m Z d  d l Z d „  Z d d d d „ Z d S(   iÿÿÿÿN(   t   GenePopc         C   sÇ  t  j j j ƒ  } d | _ t |  j ƒ | _ t |  j ƒ | _	 xt
 t |  j ƒ ƒ D]j} g  } g  } xv t
 t |  j ƒ ƒ D]_ } xV |  j | D]G } x> | d | D]. } | d k	 r¦ | | k r¦ | j | ƒ q¦ q¦ Wq‘ Wq} WxÀ t
 t |  j ƒ ƒ D]© } i  } x] |  j | D]N } xE | d | D]5 } | d k	 r%| j | d ƒ }	 |	 d | | <q%q%WqWg  }
 x' | D] } |
 j | j | d ƒ ƒ qoW| j |
 ƒ qö W| j j t | ƒ | f ƒ qU W| S(   s‡   Converts a GenePop record to a FDist one.

       Parameters:
       gp_rec - Genepop Record

       Returns:
       FDist record.
    i    i   N(   t   Biot   PopGent   FDistt   Recordt   data_orgt   lent	   loci_listt   num_locit   populationst   num_popst   ranget   Nonet   appendt   gett	   loci_data(   t   gp_rect   fd_rect   lc_it   allelest   pop_datat   pop_it   indivt   alt   allele_countst   countt   allele_arrayt   allele(    (    s‰   /oak/stanford/groups/akundaje/marinovg/programs/biopython-1.50.tar.gz/biopython-1.50/build/lib.linux-x86_64-2.7/Bio/PopGen/FDist/Utils.pyt   convert_genepop_to_fdist   s2    		 i   i    g{®Gázt?c         C   sg   t  | |  ƒ | k  r# | | | f S| |  k rF | } | | d } n | } | | d } | | | f S(   sW   Calculates the next Fst attempt in order to approximate a
       desired Fst.
    
    i   (   t   abs(   t   desired_fstt   simulated_fstt   parameter_fstt   max_run_fstt   min_run_fstt   limitt   next_parameter_fst(    (    s‰   /oak/stanford/groups/akundaje/marinovg/programs/biopython-1.50.tar.gz/biopython-1.50/build/lib.linux-x86_64-2.7/Bio/PopGen/FDist/Utils.pyt   approximate_fst6   s    (   t   ost
   Bio.PopGenR    t   Bio.PopGen.FDistR   R   R%   (    (    (    s‰   /oak/stanford/groups/akundaje/marinovg/programs/biopython-1.50.tar.gz/biopython-1.50/build/lib.linux-x86_64-2.7/Bio/PopGen/FDist/Utils.pyt   <module>   s   	(