ó
Àö	Ic           @   s9   d  d l  Td d d „  ƒ  YZ d d „ Z d d „ Z d S(   iÿÿÿÿ(   t   *t
   MultiGraphc           B   s¤   e  Z d  Z g  d „ Z d „  Z d „  Z d „  Z d „  Z d „  Z d d „ Z
 d „  Z d	 „  Z d
 „  Z d „  Z d „  Z d „  Z d „  Z d „  Z d „  Z RS(   s5   A directed multigraph abstraction with labeled edges.c         C   s7   i  |  _  x | D] } t ƒ  |  j  | <q Wi  |  _ d S(   s$   Initializes a new MultiGraph object.N(   t   _MultiGraph__adjacency_listt   HashSett   _MultiGraph__label_map(   t   selft   nodest   n(    (    s   /oak/stanford/groups/akundaje/marinovg/programs/biopython-1.50.tar.gz/biopython-1.50/build/lib.linux-x86_64-2.7/Bio/Pathway/Rep/MultiGraph.pyt   __init__   s    	c         C   s1   t  | t ƒ o0 |  j | j k o0 |  j | j k S(   s)   Returns true if g is equal to this graph.(   t
   isinstanceR   R   R   (   R   t   g(    (    s   /oak/stanford/groups/akundaje/marinovg/programs/biopython-1.50.tar.gz/biopython-1.50/build/lib.linux-x86_64-2.7/Bio/Pathway/Rep/MultiGraph.pyt   __eq__   s    c         C   s   |  j  | ƒ S(   s-   Returns true if g is not equal to this graph.(   R   (   R   R
   (    (    s   /oak/stanford/groups/akundaje/marinovg/programs/biopython-1.50.tar.gz/biopython-1.50/build/lib.linux-x86_64-2.7/Bio/Pathway/Rep/MultiGraph.pyt   __ne__   s    c         C   s‡   d } |  j  j ƒ  } | j ƒ  x] | D]U } |  j  | j ƒ  } | j ƒ  | d t | ƒ d d j t t | ƒ ƒ d } q& W| d S(   s6   Returns an unique string representation of this graph.s   <MultiGraph: t   (s   : t   ,t   )t   >(   R   t   keyst   sortt   listt   reprt   joint   map(   R   t   sR   t   keyt   values(    (    s   /oak/stanford/groups/akundaje/marinovg/programs/biopython-1.50.tar.gz/biopython-1.50/build/lib.linux-x86_64-2.7/Bio/Pathway/Rep/MultiGraph.pyt   __repr__   s    

6c         C   s|   t  |  j j ƒ  ƒ } t d „  t t  |  j j ƒ  ƒ ƒ } t  |  j j ƒ  ƒ } d t | ƒ d t | ƒ d t | ƒ d S(   s3   Returns a concise string description of this graph.c         S   s   |  | S(   N(    (   t   xt   y(    (    s   /oak/stanford/groups/akundaje/marinovg/programs/biopython-1.50.tar.gz/biopython-1.50/build/lib.linux-x86_64-2.7/Bio/Pathway/Rep/MultiGraph.pyt   <lambda>+   s    s   <MultiGraph: s
    node(s), s
    edge(s), s    unique label(s)>(   t   lenR   R   t   reduceR   R   R   t   str(   R   t   nodenumt   edgenumt   labelnum(    (    s   /oak/stanford/groups/akundaje/marinovg/programs/biopython-1.50.tar.gz/biopython-1.50/build/lib.linux-x86_64-2.7/Bio/Pathway/Rep/MultiGraph.pyt   __str__(   s
    	c         C   s&   | |  j  k r" t ƒ  |  j  | <n  d S(   s   Adds a node to this graph.N(   R   R   (   R   t   node(    (    s   /oak/stanford/groups/akundaje/marinovg/programs/biopython-1.50.tar.gz/biopython-1.50/build/lib.linux-x86_64-2.7/Bio/Pathway/Rep/MultiGraph.pyt   add_node3   s    c         C   s°   | |  j  k r( t d t | ƒ ƒ ‚ n  | |  j  k rP t d t | ƒ ƒ ‚ n  | | f } |  j  | j | ƒ | |  j k r’ t ƒ  |  j | <n  |  j | j | | f ƒ d S(   s   Adds an edge to this graph.s   Unknown <from> node: s   Unknown <to> node: N(   R   t
   ValueErrorR    t   addR   R   (   R   t   sourcet   tot   labelt   edge(    (    s   /oak/stanford/groups/akundaje/marinovg/programs/biopython-1.50.tar.gz/biopython-1.50/build/lib.linux-x86_64-2.7/Bio/Pathway/Rep/MultiGraph.pyt   add_edge8   s    c         C   s9   | |  j  k r( t d t | ƒ ƒ ‚ n  |  j  | j ƒ  S(   s2   Returns a list of (child, label) pairs for parent.s   Unknown <parent> node: (   R   R'   R    R   (   R   t   parent(    (    s   /oak/stanford/groups/akundaje/marinovg/programs/biopython-1.50.tar.gz/biopython-1.50/build/lib.linux-x86_64-2.7/Bio/Pathway/Rep/MultiGraph.pyt   child_edgesD   s    c         C   s6   t  g  |  j | ƒ D] } | d ^ q ƒ } | j ƒ  S(   s-   Returns a list of unique children for parent.i    (   R   R/   R   (   R   R.   R   R   (    (    s   /oak/stanford/groups/akundaje/marinovg/programs/biopython-1.50.tar.gz/biopython-1.50/build/lib.linux-x86_64-2.7/Bio/Pathway/Rep/MultiGraph.pyt   childrenJ   s    ,c         C   s9   | |  j  k r( t d t | ƒ ƒ ‚ n  |  j  | j ƒ  S(   s0   Returns a list of all the edges with this label.s   Unknown label: (   R   R'   R    R   (   R   R+   (    (    s   /oak/stanford/groups/akundaje/marinovg/programs/biopython-1.50.tar.gz/biopython-1.50/build/lib.linux-x86_64-2.7/Bio/Pathway/Rep/MultiGraph.pyt   edgesO   s    c         C   s   |  j  j ƒ  S(   s4   Returns a list of all the edge labels in this graph.(   R   R   (   R   (    (    s   /oak/stanford/groups/akundaje/marinovg/programs/biopython-1.50.tar.gz/biopython-1.50/build/lib.linux-x86_64-2.7/Bio/Pathway/Rep/MultiGraph.pyt   labelsU   s    c         C   s   |  j  j ƒ  S(   s*   Returns a list of the nodes in this graph.(   R   R   (   R   (    (    s   /oak/stanford/groups/akundaje/marinovg/programs/biopython-1.50.tar.gz/biopython-1.50/build/lib.linux-x86_64-2.7/Bio/Pathway/Rep/MultiGraph.pyR   Y   s    c         C   sš   | |  j  k r( t d t | ƒ ƒ ‚ n  g  } xe |  j  j ƒ  D]T } |  j  | } x> | j ƒ  D]0 } | d | k r^ | j | | d f ƒ q^ q^ Wq> W| S(   s2   Returns a list of (parent, label) pairs for child.s   Unknown <child> node: i    i   (   R   R'   R    R   R   t   append(   R   t   childt   parentsR.   R0   R   (    (    s   /oak/stanford/groups/akundaje/marinovg/programs/biopython-1.50.tar.gz/biopython-1.50/build/lib.linux-x86_64-2.7/Bio/Pathway/Rep/MultiGraph.pyt   parent_edges]   s    "c         C   s6   t  g  |  j | ƒ D] } | d ^ q ƒ } | j ƒ  S(   s+   Returns a list of unique parents for child.i    (   R   R6   R   (   R   R4   R   R   (    (    s   /oak/stanford/groups/akundaje/marinovg/programs/biopython-1.50.tar.gz/biopython-1.50/build/lib.linux-x86_64-2.7/Bio/Pathway/Rep/MultiGraph.pyR5   i   s    ,c         C   sç   | |  j  k r( t d t | ƒ ƒ ‚ n  |  j  | =xF |  j  j ƒ  D]5 } t t | d „ |  j  | j ƒ  ƒ ƒ |  j  | <qB Wxe |  j j ƒ  D]T } t t | d „ |  j | j ƒ  ƒ ƒ } | j ƒ  rÒ |  j | =q‹ | |  j | <q‹ Wd S(   s+   Removes node and all edges connected to it.s   Unknown node: c         S   s   |  d | k	 S(   Ni    (    (   R   R%   (    (    s   /oak/stanford/groups/akundaje/marinovg/programs/biopython-1.50.tar.gz/biopython-1.50/build/lib.linux-x86_64-2.7/Bio/Pathway/Rep/MultiGraph.pyR   v   s    c         S   s   |  d | k	 o |  d | k	 S(   Ni    i   (    (   R   R%   (    (    s   /oak/stanford/groups/akundaje/marinovg/programs/biopython-1.50.tar.gz/biopython-1.50/build/lib.linux-x86_64-2.7/Bio/Pathway/Rep/MultiGraph.pyR   z   s    N(	   R   R'   R    R   R   t   filterR   R   t   empty(   R   R%   R   R+   t   lm(    (    s   /oak/stanford/groups/akundaje/marinovg/programs/biopython-1.50.tar.gz/biopython-1.50/build/lib.linux-x86_64-2.7/Bio/Pathway/Rep/MultiGraph.pyt   remove_noden   s    
$c         C   s   t  d ƒ ‚ d S(   s    Removes edge. -- NOT IMPLEMENTEDs"   remove_edge is not yet implementedN(   t   NotImplementedError(   R   R.   R4   R+   (    (    s   /oak/stanford/groups/akundaje/marinovg/programs/biopython-1.50.tar.gz/biopython-1.50/build/lib.linux-x86_64-2.7/Bio/Pathway/Rep/MultiGraph.pyt   remove_edgeƒ   s    N(   t   __name__t
   __module__t   __doc__R   R   R   R   R$   R&   t   NoneR-   R/   R0   R1   R2   R   R6   R5   R:   R<   (    (    (    s   /oak/stanford/groups/akundaje/marinovg/programs/biopython-1.50.tar.gz/biopython-1.50/build/lib.linux-x86_64-2.7/Bio/Pathway/Rep/MultiGraph.pyR   	   s"   													c         C   s×   i  } g  } t  t j ƒ  ƒ d k  r( | S| d k rG t j ƒ  d } n  d | | <| j | ƒ t j | ƒ } xc t  | ƒ d k rÒ | d } | d } | | k rp | j | ƒ d | | <t j | ƒ | } qp qp W| S(   sÊ   Depth first search of g.

    Returns a list of all nodes that can be reached from the root node
    in depth-first order.

    If root is not given, the search will be rooted at an arbitrary node.
    i   i    N(   R   R
   R   R@   R3   R0   (   t   grapht   roott   seent   searcht   currentR%   (    (    s   /oak/stanford/groups/akundaje/marinovg/programs/biopython-1.50.tar.gz/biopython-1.50/build/lib.linux-x86_64-2.7/Bio/Pathway/Rep/MultiGraph.pyt	   df_searchŠ   s"    



c         C   sÚ   i  } g  } t  t j ƒ  ƒ d k  r( | S| d k rG t j ƒ  d } n  d | | <| j | ƒ t j | ƒ } xf t  | ƒ d k rÕ | d } | d } | | k rp | j | ƒ d | | <| j t j | ƒ ƒ qp qp W| S(   sÎ   Breadth first search of g.

    Returns a list of all nodes that can be reached from the root node
    in breadth-first order.

    If root is not given, the search will be rooted at an arbitrary node.
    i   i    N(   R   R
   R   R@   R3   R0   t   extend(   RA   RB   RC   RD   RE   R%   (    (    s   /oak/stanford/groups/akundaje/marinovg/programs/biopython-1.50.tar.gz/biopython-1.50/build/lib.linux-x86_64-2.7/Bio/Pathway/Rep/MultiGraph.pyt	   bf_search¤   s"    



N(    (   t   Bio.Pathway.Rep.HashSetR   R@   RF   RH   (    (    (    s   /oak/stanford/groups/akundaje/marinovg/programs/biopython-1.50.tar.gz/biopython-1.50/build/lib.linux-x86_64-2.7/Bio/Pathway/Rep/MultiGraph.pyt   <module>   s   
