ó
Àö	Ic           @   s!   d  d l  Td d d „  ƒ  YZ d S(   iÿÿÿÿ(   t   *t   Graphc           B   s¤   e  Z d  Z g  d „ Z d „  Z d „  Z d „  Z d „  Z d „  Z d d „ Z
 d „  Z d	 „  Z d
 „  Z d „  Z d „  Z d „  Z d „  Z d „  Z d „  Z RS(   s0   A directed graph abstraction with labeled edges.c         C   s@   i  |  _  x | D] } t ƒ  |  j  | <q Wi  |  _ i  |  _ d S(   s   Initializes a new Graph object.N(   t   _Graph__adjacency_listt   HashSett   _Graph__label_mapt   _Graph__edge_map(   t   selft   nodest   n(    (    sˆ   /oak/stanford/groups/akundaje/marinovg/programs/biopython-1.50.tar.gz/biopython-1.50/build/lib.linux-x86_64-2.7/Bio/Pathway/Rep/Graph.pyt   __init__   s
    		c         C   sC   t  | t ƒ oB |  j | j k oB |  j | j k oB |  j | j k S(   s)   Returns true if g is equal to this graph.(   t
   isinstanceR   R   R   R   (   R   t   g(    (    sˆ   /oak/stanford/groups/akundaje/marinovg/programs/biopython-1.50.tar.gz/biopython-1.50/build/lib.linux-x86_64-2.7/Bio/Pathway/Rep/Graph.pyt   __eq__   s    c         C   s   |  j  | ƒ S(   s-   Returns true if g is not equal to this graph.(   R   (   R   R   (    (    sˆ   /oak/stanford/groups/akundaje/marinovg/programs/biopython-1.50.tar.gz/biopython-1.50/build/lib.linux-x86_64-2.7/Bio/Pathway/Rep/Graph.pyt   __ne__   s    c         C   s­   d } |  j  j ƒ  } | j ƒ  xƒ | D]{ } g  |  j  | j ƒ  D] } | |  j | | f f ^ q@ } | j ƒ  | d t | ƒ d d j t t | ƒ ƒ d } q& W| d S(   s6   Returns an unique string representation of this graph.s   <Graph: t   (s   : t   ,t   )t   >(   R   t   keyst   sortt   listR   t   reprt   joint   map(   R   t   sR   t   keyt   xt   values(    (    sˆ   /oak/stanford/groups/akundaje/marinovg/programs/biopython-1.50.tar.gz/biopython-1.50/build/lib.linux-x86_64-2.7/Bio/Pathway/Rep/Graph.pyt   __repr__   s    
6
6c         C   s|   t  |  j j ƒ  ƒ } t d „  t t  |  j j ƒ  ƒ ƒ } t  |  j j ƒ  ƒ } d t | ƒ d t | ƒ d t | ƒ d S(   s3   Returns a concise string description of this graph.c         S   s   |  | S(   N(    (   R   t   y(    (    sˆ   /oak/stanford/groups/akundaje/marinovg/programs/biopython-1.50.tar.gz/biopython-1.50/build/lib.linux-x86_64-2.7/Bio/Pathway/Rep/Graph.pyt   <lambda>.   s    s   <Graph: s
    node(s), s
    edge(s), s    unique label(s)>(   t   lenR   R   t   reduceR   R   R   t   str(   R   t   nodenumt   edgenumt   labelnum(    (    sˆ   /oak/stanford/groups/akundaje/marinovg/programs/biopython-1.50.tar.gz/biopython-1.50/build/lib.linux-x86_64-2.7/Bio/Pathway/Rep/Graph.pyt   __str__+   s
    	c         C   s&   | |  j  k r" t ƒ  |  j  | <n  d S(   s   Adds a node to this graph.N(   R   R   (   R   t   node(    (    sˆ   /oak/stanford/groups/akundaje/marinovg/programs/biopython-1.50.tar.gz/biopython-1.50/build/lib.linux-x86_64-2.7/Bio/Pathway/Rep/Graph.pyt   add_node6   s    c         C   só   | |  j  k r( t d t | ƒ ƒ ‚ n  | |  j  k rP t d t | ƒ ƒ ‚ n  | | f |  j k rŒ t t | ƒ d t | ƒ d ƒ ‚ n  |  j  | j | ƒ | |  j k rÂ t ƒ  |  j | <n  |  j | j | | f ƒ | |  j | | f <d S(   s   Adds an edge to this graph.s   Unknown <from> node: s   Unknown <to> node: s    -> s    existsN(   R   t
   ValueErrorR!   R   t   addR   R   (   R   t   sourcet   tot   label(    (    sˆ   /oak/stanford/groups/akundaje/marinovg/programs/biopython-1.50.tar.gz/biopython-1.50/build/lib.linux-x86_64-2.7/Bio/Pathway/Rep/Graph.pyt   add_edge;   s    'c         C   s_   | |  j  k r( t d t | ƒ ƒ ‚ n  g  |  j  | j ƒ  D] } | |  j | | f f ^ q< S(   s2   Returns a list of (child, label) pairs for parent.s   Unknown <parent> node: (   R   R(   R!   R   R   (   R   t   parentR   (    (    sˆ   /oak/stanford/groups/akundaje/marinovg/programs/biopython-1.50.tar.gz/biopython-1.50/build/lib.linux-x86_64-2.7/Bio/Pathway/Rep/Graph.pyt   child_edgesI   s    c         C   s   |  j  | j ƒ  S(   s-   Returns a list of unique children for parent.(   R   R   (   R   R.   (    (    sˆ   /oak/stanford/groups/akundaje/marinovg/programs/biopython-1.50.tar.gz/biopython-1.50/build/lib.linux-x86_64-2.7/Bio/Pathway/Rep/Graph.pyt   childrenP   s    c         C   s9   | |  j  k r( t d t | ƒ ƒ ‚ n  |  j  | j ƒ  S(   s0   Returns a list of all the edges with this label.s   Unknown label: (   R   R(   R!   R   (   R   R,   (    (    sˆ   /oak/stanford/groups/akundaje/marinovg/programs/biopython-1.50.tar.gz/biopython-1.50/build/lib.linux-x86_64-2.7/Bio/Pathway/Rep/Graph.pyt   edgesT   s    c         C   s   |  j  j ƒ  S(   s4   Returns a list of all the edge labels in this graph.(   R   R   (   R   (    (    sˆ   /oak/stanford/groups/akundaje/marinovg/programs/biopython-1.50.tar.gz/biopython-1.50/build/lib.linux-x86_64-2.7/Bio/Pathway/Rep/Graph.pyt   labelsZ   s    c         C   s   |  j  j ƒ  S(   s*   Returns a list of the nodes in this graph.(   R   R   (   R   (    (    sˆ   /oak/stanford/groups/akundaje/marinovg/programs/biopython-1.50.tar.gz/biopython-1.50/build/lib.linux-x86_64-2.7/Bio/Pathway/Rep/Graph.pyR   ^   s    c         C   sŸ   | |  j  k r( t d t | ƒ ƒ ‚ n  g  } xj |  j  j ƒ  D]Y } |  j  | } xC | j ƒ  D]5 } | | k r^ | j | |  j | | f f ƒ q^ q^ Wq> W| S(   s2   Returns a list of (parent, label) pairs for child.s   Unknown <child> node: (   R   R(   R!   R   R   t   appendR   (   R   t   childt   parentsR.   R0   R   (    (    sˆ   /oak/stanford/groups/akundaje/marinovg/programs/biopython-1.50.tar.gz/biopython-1.50/build/lib.linux-x86_64-2.7/Bio/Pathway/Rep/Graph.pyt   parent_edgesb   s    +c         C   s6   t  g  |  j | ƒ D] } | d ^ q ƒ } | j ƒ  S(   s+   Returns a list of unique parents for child.i    (   R   R6   R   (   R   R4   R   R   (    (    sˆ   /oak/stanford/groups/akundaje/marinovg/programs/biopython-1.50.tar.gz/biopython-1.50/build/lib.linux-x86_64-2.7/Bio/Pathway/Rep/Graph.pyR5   n   s    ,c         C   s.  | |  j  k r( t d t | ƒ ƒ ‚ n  |  j  | =xF |  j  j ƒ  D]5 } t t | d „ |  j  | j ƒ  ƒ ƒ |  j  | <qB Wxe |  j j ƒ  D]T } t t | d „ |  j | j ƒ  ƒ ƒ } | j ƒ  rÒ |  j | =q‹ | |  j | <q‹ WxD |  j	 j ƒ  D]3 } | d | k s| d | k ró |  j	 | =qó qó Wd S(   s+   Removes node and all edges connected to it.s   Unknown node: c         S   s
   |  | k	 S(   N(    (   R   R&   (    (    sˆ   /oak/stanford/groups/akundaje/marinovg/programs/biopython-1.50.tar.gz/biopython-1.50/build/lib.linux-x86_64-2.7/Bio/Pathway/Rep/Graph.pyR   {   s    c         S   s   |  d | k	 o |  d | k	 S(   Ni    i   (    (   R   R&   (    (    sˆ   /oak/stanford/groups/akundaje/marinovg/programs/biopython-1.50.tar.gz/biopython-1.50/build/lib.linux-x86_64-2.7/Bio/Pathway/Rep/Graph.pyR      s    i    i   N(
   R   R(   R!   R   R   t   filterR   R   t   emptyR   (   R   R&   R   R,   t   lmt   edge(    (    sˆ   /oak/stanford/groups/akundaje/marinovg/programs/biopython-1.50.tar.gz/biopython-1.50/build/lib.linux-x86_64-2.7/Bio/Pathway/Rep/Graph.pyt   remove_nodes   s    
$ c         C   s   t  d ƒ ‚ d S(   s    Removes edge. -- NOT IMPLEMENTEDs"   remove_edge is not yet implementedN(   t   NotImplementedError(   R   R.   R4   R,   (    (    sˆ   /oak/stanford/groups/akundaje/marinovg/programs/biopython-1.50.tar.gz/biopython-1.50/build/lib.linux-x86_64-2.7/Bio/Pathway/Rep/Graph.pyt   remove_edgeŒ   s    N(   t   __name__t
   __module__t   __doc__R	   R   R   R   R%   R'   t   NoneR-   R/   R0   R1   R2   R   R6   R5   R;   R=   (    (    (    sˆ   /oak/stanford/groups/akundaje/marinovg/programs/biopython-1.50.tar.gz/biopython-1.50/build/lib.linux-x86_64-2.7/Bio/Pathway/Rep/Graph.pyR   	   s"   													N(    (   t   Bio.Pathway.Rep.HashSetR   (    (    (    sˆ   /oak/stanford/groups/akundaje/marinovg/programs/biopython-1.50.tar.gz/biopython-1.50/build/lib.linux-x86_64-2.7/Bio/Pathway/Rep/Graph.pyt   <module>   s   
