ó °;çIc@sÌdZddlmZddlTddlmZddlmZddlm Z ddd„ƒYZ d e fd „ƒYZ d dd „ƒYZ d dd„ƒYZddd„ƒYZde fd„ƒYZdS(sGParsing AlignACE and CompareACE files: AlignAceParser,CompareAceParser iÿÿÿÿ(tFile(t*(tMotif(tIUPAC(tSeqtAlignAceConsumercBszeZdZd„Zd„Zd„Zd„Zd„Zd„Zd„Z d„Z d „Z d „Z d „Z d „ZRS( sÞ The general purpose consumer for the AlignAceScanner. Should be passed as the consumer to the feed method of the AlignAceScanner. After 'consuming' the file, it has the list of motifs in the motifs property. cCsg|_d|_d|_dS(N(tmotifstNonet current_motift param_dict(tself((s/oak/stanford/groups/akundaje/marinovg/programs/biopython-1.50.tar.gz/biopython-1.50/build/lib.linux-x86_64-2.7/Bio/Motif/Parsers/AlignAce.pyt__init__s  cCs i|_dS(N(R (R tline((s/oak/stanford/groups/akundaje/marinovg/programs/biopython-1.50.tar.gz/biopython-1.50/build/lib.linux-x86_64-2.7/Bio/Motif/Parsers/AlignAce.pyt parametersscCsC|jdƒdjƒ}|jdƒdjƒ}||j|(R R1((s/oak/stanford/groups/akundaje/marinovg/programs/biopython-1.50.tar.gz/biopython-1.50/build/lib.linux-x86_64-2.7/Bio/Motif/Parsers/AlignAce.pyR2°s(R)R*R+R R2(((s/oak/stanford/groups/akundaje/marinovg/programs/biopython-1.50.tar.gz/biopython-1.50/build/lib.linux-x86_64-2.7/Bio/Motif/Parsers/AlignAce.pyR?¦s N(((((R+tBioRtBio.ParserSupportt Bio.MotifRt Bio.AlphabetRtBio.SeqRRtAbstractParserR,R-R<R=R?(((s/oak/stanford/groups/akundaje/marinovg/programs/biopython-1.50.tar.gz/biopython-1.50/build/lib.linux-x86_64-2.7/Bio/Motif/Parsers/AlignAce.pyts 2 5