ó vJ/Ic@sdZddddd„ZdS(s’Generic functions which are useful for working with HMMs. This just collects general functions which you might like to use in dealing with HMMs. t Emissionss Real StatesPredicted StateiKc Cstt|ƒt|ƒt|ƒƒd}||}|j|ƒ}|j|ƒ}|j|ƒ}d} x®| |t|ƒkr‡|} nt|ƒ| } d||j| | |!fGHd||j| | |!fGHd||j| | |!fGHt|ƒ| |krPn| |7} qhWdS(s=Print out a state sequence prediction in a nice manner. Arguments: o emissions -- The sequence of emissions of the sequence you are dealing with. o real_state -- The actual state path that generated the emissions. o predicted_state -- A state path predicted by some kind of HMM model. iis%s%ss%s%s N(tmaxtlentljusttdata( t emissionst real_statetpredicted_statetemission_titlet real_titletpredicted_titlet line_widtht title_lengtht seq_lengtht cur_positiont extension((s„/oak/stanford/groups/akundaje/marinovg/programs/biopython-1.50.tar.gz/biopython-1.50/build/lib.linux-x86_64-2.7/Bio/HMM/Utilities.pytpretty_print_predictions,    N(t__doc__R(((s„/oak/stanford/groups/akundaje/marinovg/programs/biopython-1.50.tar.gz/biopython-1.50/build/lib.linux-x86_64-2.7/Bio/HMM/Utilities.pyts