ó 2@¨Hc@sdZddd„ƒYZdS(s7Useful utilities for helping in parsing GenBank files. tFeatureValueCleanercBs5eZdZdgZed„Zd„Zd„ZRS(s¬Provide specialized capabilities for cleaning up values in features. This class is designed to provide a mechanism to clean up and process values in the key/value pairs of GenBank features. This is useful because in cases like: /translation="MED YDPWNLRFQSKYKSRDA" you'll end up with a value with s and spaces in it like: "MED YDPWEL..." which you probably don't want. This cleaning needs to be done on a case by case basis since it is impossible to interpret whether you should be concatenating everything (as in translations), or combining things with spaces (as might be the case with /notes). t translationcCs ||_dS(s6Initialize with the keys we should deal with. N(t _to_process(tselft to_process((s„/oak/stanford/groups/akundaje/marinovg/programs/biopython-1.50.tar.gz/biopython-1.50/build/lib.linux-x86_64-2.7/Bio/GenBank/utils.pyt__init__scCs]||jkrYy#t|d|ƒ}||ƒ}WqYtk rUtd|ƒ‚qYXn|S(s—Clean the specified value and return it. If the value is not specified to be dealt with, the original value will be returned. s _clean_%ssNo function to clean key: %s(RtgetattrtAttributeErrortAssertionError(Rtkey_nametvaluetcleaner((s„/oak/stanford/groups/akundaje/marinovg/programs/biopython-1.50.tar.gz/biopython-1.50/build/lib.linux-x86_64-2.7/Bio/GenBank/utils.pyt clean_values cCs|jƒ}dj|ƒS(sDConcatenate a translation value to one long protein string. t(tsplittjoin(RR ttranslation_parts((s„/oak/stanford/groups/akundaje/marinovg/programs/biopython-1.50.tar.gz/biopython-1.50/build/lib.linux-x86_64-2.7/Bio/GenBank/utils.pyt_clean_translation,s (t__name__t __module__t__doc__tkeys_to_processRR R(((s„/oak/stanford/groups/akundaje/marinovg/programs/biopython-1.50.tar.gz/biopython-1.50/build/lib.linux-x86_64-2.7/Bio/GenBank/utils.pyRs    N((RR(((s„/oak/stanford/groups/akundaje/marinovg/programs/biopython-1.50.tar.gz/biopython-1.50/build/lib.linux-x86_64-2.7/Bio/GenBank/utils.pyts