ó ęŪ§Hc@sLdZdd d„ƒYZdd d„ƒYZdd d„ƒYZd„ZdS( s<Code to interact with the primersearch program from EMBOSS. t InputRecordcBs)eZdZd„Zd„Zd„ZRS(s„Represent the input file into the primersearch program. This makes it easy to add primer information and write it out to the simple primer file format. cCs g|_dS(N(t primer_info(tself((sŠ/oak/stanford/groups/akundaje/marinovg/programs/biopython-1.50.tar.gz/biopython-1.50/build/lib.linux-x86_64-2.7/Bio/Emboss/PrimerSearch.pyt__init__ scCs>d}x1|jD]&\}}}|d|||f7}qW|S(Nts %s %s %s (R(Rtoutputtnametprimer1tprimer2((sŠ/oak/stanford/groups/akundaje/marinovg/programs/biopython-1.50.tar.gz/biopython-1.50/build/lib.linux-x86_64-2.7/Bio/Emboss/PrimerSearch.pyt__str__scCs|jj|||fƒdS(s.Add primer information to the record. N(Rtappend(Rt primer_nametfirst_primer_seqtsecond_primer_seq((sŠ/oak/stanford/groups/akundaje/marinovg/programs/biopython-1.50.tar.gz/biopython-1.50/build/lib.linux-x86_64-2.7/Bio/Emboss/PrimerSearch.pytadd_primer_sets(t__name__t __module__t__doc__RR R(((sŠ/oak/stanford/groups/akundaje/marinovg/programs/biopython-1.50.tar.gz/biopython-1.50/build/lib.linux-x86_64-2.7/Bio/Emboss/PrimerSearch.pyRs  t OutputRecordcBseZdZd„ZRS(s»Represent the information from a primersearch job. amplifiers is a dictionary where the keys are the primer names and the values are a list of PrimerSearchAmplifier objects. cCs i|_dS(N(t amplifiers(R((sŠ/oak/stanford/groups/akundaje/marinovg/programs/biopython-1.50.tar.gz/biopython-1.50/build/lib.linux-x86_64-2.7/Bio/Emboss/PrimerSearch.pyR!s(RRRR(((sŠ/oak/stanford/groups/akundaje/marinovg/programs/biopython-1.50.tar.gz/biopython-1.50/build/lib.linux-x86_64-2.7/Bio/Emboss/PrimerSearch.pyRst AmplifiercBseZdZd„ZRS(s4Represent a single amplification from a primer. cCsd|_d|_dS(NRi(thit_infotlength(R((sŠ/oak/stanford/groups/akundaje/marinovg/programs/biopython-1.50.tar.gz/biopython-1.50/build/lib.linux-x86_64-2.7/Bio/Emboss/PrimerSearch.pyR's (RRRR(((sŠ/oak/stanford/groups/akundaje/marinovg/programs/biopython-1.50.tar.gz/biopython-1.50/build/lib.linux-x86_64-2.7/Bio/Emboss/PrimerSearch.pyR$scCs3tƒ}xå|D]Ż}|jƒs(qq|jdƒrW|jƒd}g|j|s