ó
R‘ Ic           @   s‡  d  Z  d Z d d l Z d d l Z d d l m Z y d d l Z Wn e d ƒ ‚ n Xd Z d e j	 f d „  ƒ  YZ
 d „  Z d	 e f d
 „  ƒ  YZ d e f d „  ƒ  YZ d e f d „  ƒ  YZ d e f d „  ƒ  YZ d e e f d „  ƒ  YZ d e e f d „  ƒ  YZ d e f d „  ƒ  YZ d e f d „  ƒ  YZ d e f d „  ƒ  YZ d e f d „  ƒ  YZ d „  Z e d k rƒe ƒ  n  d S(   s™  
Bio.DocSQL: easy access to DB API databases.

>>> import DocSQL, MySQLdb, os
>>> db=MySQLdb.connect(passwd='', db='test')
>>> class CreatePeople(DocSQL.Create):
...     """
...     CREATE TEMPORARY TABLE people
...     (id INT UNSIGNED NOT NULL PRIMARY KEY AUTO_INCREMENT,
...     last_name TINYTEXT,
...     first_name TINYTEXT)
...     """
...
>>> CreatePeople(connection=db)
CreatePeople(message=Success)
s   $Revision: 1.13 $iÿÿÿÿN(   t   MissingExternalDependencyErrors.   Install MySQLdb if you want to use Bio.DocSQL.t   NoInsertionErrorc           B   s   e  Z RS(    (   t   __name__t
   __module__(    (    (    s}   /oak/stanford/groups/akundaje/marinovg/programs/biopython-1.50.tar.gz/biopython-1.50/build/lib.linux-x86_64-2.7/Bio/DocSQL.pyR   (   s   c         C   s   |  d  d k r t  ‚ n  d  S(   Ni   t   _names(   t   AttributeError(   t   name(    (    s}   /oak/stanford/groups/akundaje/marinovg/programs/biopython-1.50.tar.gz/biopython-1.50/build/lib.linux-x86_64-2.7/Bio/DocSQL.pyt   _check_is_public+   s    t   QueryRowc           B   s#   e  Z d  „  Z d „  Z d „  Z RS(   c         C   s±   y& | j  ƒ  } t t |  ƒ j | ƒ Wn t k
 r? t ‚ n Xt j |  d g  | j D] } | d ^ qV ƒ t j |  d i  ƒ x* t	 |  j
 ƒ D] \ } } | |  j | <q Wd  S(   NR   i    t   _names_hash(   t   fetchonet   superR   t   __init__t	   TypeErrort   StopIterationt   objectt   __setattr__t   descriptiont	   enumerateR   R	   (   t   selft   cursort   rowt   xt   iR   (    (    s}   /oak/stanford/groups/akundaje/marinovg/programs/biopython-1.50.tar.gz/biopython-1.50/build/lib.linux-x86_64-2.7/Bio/DocSQL.pyR   0   s    
-c         C   sW   t  | ƒ y |  |  j | SWn3 t t f k
 rR t d |  j j | f ƒ ‚ n Xd  S(   Ns!   '%s' object has no attribute '%s'(   R   R	   t   KeyErrorR   t	   __class__R   (   R   R   (    (    s}   /oak/stanford/groups/akundaje/marinovg/programs/biopython-1.50.tar.gz/biopython-1.50/build/lib.linux-x86_64-2.7/Bio/DocSQL.pyt   __getattr__=   s    
c         C   s|   y |  j  Wn! t k
 r. t j |  | | ƒ SXt | ƒ y |  j  | } | |  | <Wn! t k
 rw t j |  | | ƒ SXd  S(   N(   R	   R   R   R   R   R   (   R   R   t   valuet   index(    (    s}   /oak/stanford/groups/akundaje/marinovg/programs/biopython-1.50.tar.gz/biopython-1.50/build/lib.linux-x86_64-2.7/Bio/DocSQL.pyR   E   s    
(   R   R   R   R   R   (    (    (    s}   /oak/stanford/groups/akundaje/marinovg/programs/biopython-1.50.tar.gz/biopython-1.50/build/lib.linux-x86_64-2.7/Bio/DocSQL.pyR   /   s   		t   Queryc           B   se   e  Z d  Z d Z d Z d Z d Z d Z d Z e	 Z
 d „  Z d „  Z d „  Z d „  Z d	 „  Z RS(
   s   
    SHOW TABLES
    t   Failuret   Successs   not executedt    c         O   sƒ   y | d |  _  Wn t k
 r- t  |  _  n Xy | d |  _ Wn t k
 r[ d |  _ n X|  j |  j |  j |  _ | |  _ d  S(   Nt
   connectiont   diagnosticsi    (   R!   R   R"   t   prefixt   __doc__t   suffixt	   statementt   params(   R   t   argst   keywds(    (    s}   /oak/stanford/groups/akundaje/marinovg/programs/biopython-1.50.tar.gz/biopython-1.50/build/lib.linux-x86_64-2.7/Bio/DocSQL.pyR   ^   s    c         C   s   t  |  |  j ƒ S(   N(   t   IterationCursorR!   (   R   (    (    s}   /oak/stanford/groups/akundaje/marinovg/programs/biopython-1.50.tar.gz/biopython-1.50/build/lib.linux-x86_64-2.7/Bio/DocSQL.pyt   __iter__k   s    c         C   s   d |  j  j |  j f S(   Ns   %s(message=%s)(   R   R   t   message(   R   (    (    s}   /oak/stanford/groups/akundaje/marinovg/programs/biopython-1.50.tar.gz/biopython-1.50/build/lib.linux-x86_64-2.7/Bio/DocSQL.pyt   __repr__n   s    c         C   s   t  |  ƒ j S(   N(   t   iterR   (   R   (    (    s}   /oak/stanford/groups/akundaje/marinovg/programs/biopython-1.50.tar.gz/biopython-1.50/build/lib.linux-x86_64-2.7/Bio/DocSQL.pyR   q   s    c         C   s   x |  D] } | GHq Wd  S(   N(    (   R   t   item(    (    s}   /oak/stanford/groups/akundaje/marinovg/programs/biopython-1.50.tar.gz/biopython-1.50/build/lib.linux-x86_64-2.7/Bio/DocSQL.pyt   dumpt   s    (   R   R   R$   t   MSG_FAILUREt   MSG_SUCCESSR,   t   error_messageR#   R%   R   t	   row_classR   R+   R-   R   R0   (    (    (    s}   /oak/stanford/groups/akundaje/marinovg/programs/biopython-1.50.tar.gz/biopython-1.50/build/lib.linux-x86_64-2.7/Bio/DocSQL.pyR   R   s   				t   QueryGenericc           B   s   e  Z d  „  Z RS(   c         O   s#   t  j |  | | Ž | f |  _ d  S(   N(   R   R   R&   (   R   R&   R(   R)   (    (    s}   /oak/stanford/groups/akundaje/marinovg/programs/biopython-1.50.tar.gz/biopython-1.50/build/lib.linux-x86_64-2.7/Bio/DocSQL.pyR   y   s    (   R   R   R   (    (    (    s}   /oak/stanford/groups/akundaje/marinovg/programs/biopython-1.50.tar.gz/biopython-1.50/build/lib.linux-x86_64-2.7/Bio/DocSQL.pyR5   x   s   R*   c           B   s   e  Z e d  „ Z d „  Z RS(   c         C   s   | d  k r t d ƒ ‚ n  | j ƒ  |  _ | j |  _ | j rb t j | j IJt j | j IJn  |  j j	 | j | j ƒ d  S(   Ns   database connection is None(
   t   NoneR   R   R4   R"   t   syst   stderrR&   R'   t   execute(   R   t   queryR!   (    (    s}   /oak/stanford/groups/akundaje/marinovg/programs/biopython-1.50.tar.gz/biopython-1.50/build/lib.linux-x86_64-2.7/Bio/DocSQL.pyR   ~   s    	c         C   s   |  j  |  j ƒ S(   N(   R4   R   (   R   (    (    s}   /oak/stanford/groups/akundaje/marinovg/programs/biopython-1.50.tar.gz/biopython-1.50/build/lib.linux-x86_64-2.7/Bio/DocSQL.pyt   nextˆ   s    (   R   R   R!   R   R;   (    (    (    s}   /oak/stanford/groups/akundaje/marinovg/programs/biopython-1.50.tar.gz/biopython-1.50/build/lib.linux-x86_64-2.7/Bio/DocSQL.pyR*   }   s   
t   QuerySinglec           B   s    e  Z d  Z d „  Z d „  Z RS(   i    c         O   s‹   |  j  } t j |  | | Ž y t j |  ƒ |  _ Wn# t j k
 rW |  j sX ‚  qX n X|  j j |  |  j ƒ  ƒ t	 j
 |  d |  j ƒ d  S(   NR,   (   R1   R   R   R   t   single_cursort   MySQLdbt   Warningt   ignore_warningsR4   R   R   R2   (   R   R(   R)   R,   (    (    s}   /oak/stanford/groups/akundaje/marinovg/programs/biopython-1.50.tar.gz/biopython-1.50/build/lib.linux-x86_64-2.7/Bio/DocSQL.pyR      s    		
c         C   s   |  j  S(   N(   R=   (   R   (    (    s}   /oak/stanford/groups/akundaje/marinovg/programs/biopython-1.50.tar.gz/biopython-1.50/build/lib.linux-x86_64-2.7/Bio/DocSQL.pyR   ˜   s    (   R   R   R@   R   R   (    (    (    s}   /oak/stanford/groups/akundaje/marinovg/programs/biopython-1.50.tar.gz/biopython-1.50/build/lib.linux-x86_64-2.7/Bio/DocSQL.pyR<   ‹   s   	t   QueryAllc           B   s   e  Z d  „  Z d „  Z RS(   c         O   s?   t  j |  | | Ž t j |  t |  j |  j ƒ  j ƒ  ƒ ƒ d  S(   N(   R   R   t   listt   mapt   process_rowR   t   fetchall(   R   R(   R)   (    (    s}   /oak/stanford/groups/akundaje/marinovg/programs/biopython-1.50.tar.gz/biopython-1.50/build/lib.linux-x86_64-2.7/Bio/DocSQL.pyR   œ   s    c         C   s   | S(   N(    (   R   R   (    (    s}   /oak/stanford/groups/akundaje/marinovg/programs/biopython-1.50.tar.gz/biopython-1.50/build/lib.linux-x86_64-2.7/Bio/DocSQL.pyRD       s    (   R   R   R   RD   (    (    (    s}   /oak/stanford/groups/akundaje/marinovg/programs/biopython-1.50.tar.gz/biopython-1.50/build/lib.linux-x86_64-2.7/Bio/DocSQL.pyRA   ›   s   	t   QueryAllFirstItemc           B   s   e  Z d  „  Z RS(   c         C   s   | d S(   Ni    (    (   R   R   (    (    s}   /oak/stanford/groups/akundaje/marinovg/programs/biopython-1.50.tar.gz/biopython-1.50/build/lib.linux-x86_64-2.7/Bio/DocSQL.pyRD   ¤   s    (   R   R   RD   (    (    (    s}   /oak/stanford/groups/akundaje/marinovg/programs/biopython-1.50.tar.gz/biopython-1.50/build/lib.linux-x86_64-2.7/Bio/DocSQL.pyRF   £   s   t   Createc           B   s   e  Z d  „  Z RS(   c         O   s;   y t  j |  | | Ž Wn t k
 r6 |  j |  _ n Xd  S(   N(   R<   R   R   R2   R,   (   R   R(   R)   (    (    s}   /oak/stanford/groups/akundaje/marinovg/programs/biopython-1.50.tar.gz/biopython-1.50/build/lib.linux-x86_64-2.7/Bio/DocSQL.pyR   ¨   s    (   R   R   R   (    (    (    s}   /oak/stanford/groups/akundaje/marinovg/programs/biopython-1.50.tar.gz/biopython-1.50/build/lib.linux-x86_64-2.7/Bio/DocSQL.pyRG   §   s   t   Updatec           B   s   e  Z RS(    (   R   R   (    (    (    s}   /oak/stanford/groups/akundaje/marinovg/programs/biopython-1.50.tar.gz/biopython-1.50/build/lib.linux-x86_64-2.7/Bio/DocSQL.pyRH   ®   s   t   Insertc           B   s   e  Z d  Z d „  Z RS(   s   Couldn't insert: %s. c         O   sý   y t  j |  | | Ž Wnj t j k
 rƒ } |  j |  j | d 7_ y |  j Wn t k
 rm d |  _ n Xt j |  j ƒ ‚ n X|  j ƒ  j	 ƒ  |  _
 y |  j |  j ƒ  j 7_ Wn# t k
 rÚ |  j ƒ  j |  _ n X|  j ƒ  j d k rù t ‚ n  d  S(   Ni   i    (   RG   R   R>   t   IntegrityErrorR3   t   MSG_INTEGRITY_ERRORt   total_countR   R   t	   insert_idt   idt   rowcountR   (   R   R(   R)   t
   error_data(    (    s}   /oak/stanford/groups/akundaje/marinovg/programs/biopython-1.50.tar.gz/biopython-1.50/build/lib.linux-x86_64-2.7/Bio/DocSQL.pyR   ´   s     (   R   R   RK   R   (    (    (    s}   /oak/stanford/groups/akundaje/marinovg/programs/biopython-1.50.tar.gz/biopython-1.50/build/lib.linux-x86_64-2.7/Bio/DocSQL.pyRI   ±   s   c          O   s6   d d  l  } d d  l } | j | j t |  | Ž d  S(   Niÿÿÿÿ(   t   doctestR7   t   testmodt   modulesR   (   R(   R)   RQ   R7   (    (    s}   /oak/stanford/groups/akundaje/marinovg/programs/biopython-1.50.tar.gz/biopython-1.50/build/lib.linux-x86_64-2.7/Bio/DocSQL.pyt   _testÉ   s    t   __main__(   R$   t   __version__t
   exceptionsR7   t   BioR    R>   R6   R!   t	   ExceptionR   R   RB   R   R   R   R5   R*   R<   RA   RF   RG   RH   RI   RT   R   (    (    (    s}   /oak/stanford/groups/akundaje/marinovg/programs/biopython-1.50.tar.gz/biopython-1.50/build/lib.linux-x86_64-2.7/Bio/DocSQL.pyt   <module>   s0   	#&	