ó œØU=c @sëddlmZd„Zd„Zd„ZejZdGHejZej GHej GHej j GHy ej Wn dGHnXdGHeejdd ƒd GHeej d d d dƒdGHeejddddd dƒeejddddd dƒeejdd d dƒeejddddd dƒdGHeejddddƒeejddddƒd GHeejddddd!dƒd"GHeejdddd#d$dƒd%GHeejd d&d'dd#dƒeejd d&ddddƒd(GHeejed)ƒed*ƒd dd d d+d,gƒd-GHidd86d.d96d0d:6Zeejd1d2eddƒeejd1d2eddƒeejd2d1eddƒd3GHeej d4d5d'd ƒeej d6d5d'd ƒeejd4d5d'd ƒd7S(;iÿÿÿÿ(t pairwise2cCs#tj|||||ƒ}|GdS(N(Rtformat_alignment(talign1talign2tscoretbegintendts((stest_pairwise2.pyt_pretty_print_alignscCs)|jƒx|D]}t|ŒqWdS(N(tsortR(talignstalign((stest_pairwise2.pyt_pretty_print_all s  cOs|jGHt|||ŽƒdS(N(t__name__R (tfntargstkeywds((stest_pairwise2.pyt_align_and_printss%### Test the function generation codescorrectly faileds0#### Let's start with a simple global alignment.tGAACTtGATs#### Try a local alignment.tAxBxtzABzgš™™™™™¹¿is$#### Test match score, open penalty.tAAtAg@tGAAtGAgø?tGCTtGATAiiþÿÿÿs#### Test the extend penalty.tGACTtGTgš™™™™™É¿gà¿gø¿s&#### Test penalize_extend_when_openingtpenalize_extend_when_openings#### Test penalize_end_gapsgš™™™™™é¿tpenalize_end_gapss #### Test separate gap penaltiestGTCTg333333Ó¿sB#### Test separate gap penalties, with extension. Test align listtGAATtGTCCTtgap_chart-s#### Test match dictionarygà?tTgð?tATATtATTs2#### This used to cause errors, reported by DaishitabcdetctabcceN(RR(RR%(R%R%(tBioRRR RR tatglobalxxRR t__doc__tlocalcdtblahtlocalxstglobalmstglobalxstlocalxdtlistt match_dicttlocalds(((stest_pairwise2.pytsb        *