ó
 ¨èIc           @   sç  d  d l  Z  d  d l m Z d d d d d d d	 g Z d d d d
 g Z x* e D]" Z e e k rP e j e ƒ qP qP Wd GHxee D]]Z d d Gd e GHe  j j d e ƒ Z	 e j
 e e	 ƒ ƒ Z d Z x¬e D]¤Z e d 7Z e j Z e sd e j GHqÐ n  d e j e e ƒ e d „  g  e D] Z e e j ƒ ^ q#ƒ f GHe e k rVqÐ n  d  Z xe D]Z e j d  Ge j Gd Ge e j ƒ Gd GHe e j ƒ d k s¬t ‚ xÁ e j D]¶ Z e j e k  r¶d Ge j Ge e j ƒ Z e j d ƒ d  k r-e e ƒ j d ƒ \ Z  Z! d e  e" e! ƒ f GHn d Ge j GHe j# d  d GHe j$ d  d GHe j% d  d GHq¶q¶WqcWqÐ We d k rœe j& e e	 ƒ ƒ Z q‚ y/ e j& e e	 ƒ ƒ Z e' sÊt d e ƒ ‚ Wq‚ e( k
 rÞq‚ Xq‚ Wd S(!   iÿÿÿÿN(   t   NCBIXMLs
   xbt001.xmls
   xbt002.xmls
   xbt003.xmls
   xbt004.xmls
   xbt005.xmls
   xbt006.xmls
   xbt007.xmls   blastp_no_hits.xmls$   Running tests on NCBIXML.BlastParsert   *i2   s
   TESTING %st   Blasti    i   s   %s - no hitss*   %s - %i alignments with a total of %i HSPsc         C   s   |  | S(   N(    (   t   at   b(    (    s   test_NCBIXML.pyt   <lambda>3   s    i
   iöÿÿÿt   bpt   HSPss   HSP alignment lengths   e-s   e-value %se-%02is   e-valueiK   s   ...s*   NCBIXML.read(...) should reject %i recordsg»½×Ùß|Û=()   t   ost	   Bio.BlastR    t	   all_testst   detailed_testst   testt   appendt   patht   joint   datafilet   parset   opent   recordst   countt   recordt
   alignmentst   query_idt   lent   reduceR   t   hspst   E_VALUE_THRESHt	   alignmentt   titlet   lengtht   AssertionErrort   hspt   expectt   strt   ft   findt   splitt   matissat   exponentt   intt   queryt   matcht   sbjctt   readt   Falset
   ValueError(    (    (    s   test_NCBIXML.pyt   <module>   sn   		
		1(