<!-- ============================================
     ::DATATOOL:: Generated from "seqfeat.asn"
     ::DATATOOL:: by application DATATOOL version 1.9.0
     ::DATATOOL:: on 04/10/2008 16:04:22
     ============================================ -->

<!-- ============================================ -->
<!-- This section is mapped from module "NCBI-Organism"
================================================= -->

<!--
**********************************************************************

  NCBI Organism
  by James Ostell, 1994
  version 3.0

**********************************************************************
-->

<!-- Elements used by other modules:
          Org-ref -->

<!-- Elements referenced from other modules:
          Dbtag FROM NCBI-General -->
<!-- ============================================ -->

<!--
*** Org-ref ***********************************************
*
*  Reference to an organism
*     defines only the organism.. lower levels of detail for biological
*     molecules are provided by the Source object
*
-->
<!ELEMENT Org-ref (
        Org-ref_taxname?, 
        Org-ref_common?, 
        Org-ref_mod?, 
        Org-ref_db?, 
        Org-ref_syn?, 
        Org-ref_orgname?)>

<!-- preferred formal name -->
<!ELEMENT Org-ref_taxname (#PCDATA)>

<!-- common name -->
<!ELEMENT Org-ref_common (#PCDATA)>

<!-- unstructured modifiers -->
<!ELEMENT Org-ref_mod (Org-ref_mod_E*)>


<!ELEMENT Org-ref_mod_E (#PCDATA)>

<!-- ids in taxonomic or culture dbases -->
<!ELEMENT Org-ref_db (Dbtag*)>

<!-- synonyms for taxname or common -->
<!ELEMENT Org-ref_syn (Org-ref_syn_E*)>


<!ELEMENT Org-ref_syn_E (#PCDATA)>

<!ELEMENT Org-ref_orgname (OrgName)>


<!ELEMENT OrgName (
        OrgName_name?, 
        OrgName_attrib?, 
        OrgName_mod?, 
        OrgName_lineage?, 
        OrgName_gcode?, 
        OrgName_mgcode?, 
        OrgName_div?)>

<!ELEMENT OrgName_name (
        OrgName_name_binomial | 
        OrgName_name_virus | 
        OrgName_name_hybrid | 
        OrgName_name_namedhybrid | 
        OrgName_name_partial)>

<!-- genus/species type name -->
<!ELEMENT OrgName_name_binomial (BinomialOrgName)>

<!-- virus names are different -->
<!ELEMENT OrgName_name_virus (#PCDATA)>

<!-- hybrid between organisms -->
<!ELEMENT OrgName_name_hybrid (MultiOrgName)>

<!-- some hybrids have genus x species name -->
<!ELEMENT OrgName_name_namedhybrid (BinomialOrgName)>

<!-- when genus not known -->
<!ELEMENT OrgName_name_partial (PartialOrgName)>

<!-- attribution of name -->
<!ELEMENT OrgName_attrib (#PCDATA)>

<!ELEMENT OrgName_mod (OrgMod*)>

<!-- lineage with semicolon separators -->
<!ELEMENT OrgName_lineage (#PCDATA)>

<!-- genetic code (see CdRegion) -->
<!ELEMENT OrgName_gcode (%INTEGER;)>

<!-- mitochondrial genetic code -->
<!ELEMENT OrgName_mgcode (%INTEGER;)>

<!-- GenBank division code -->
<!ELEMENT OrgName_div (#PCDATA)>


<!ELEMENT OrgMod (
        OrgMod_subtype, 
        OrgMod_subname, 
        OrgMod_attrib?)>

<!ELEMENT OrgMod_subtype (%INTEGER;)>

<!--
    dosage	-  chromosome dosage of hybrid
    nat-host	-  natural host of this specimen
    gb-acronym	-  used by taxonomy database
    gb-anamorph	-  used by taxonomy database
    gb-synonym	-  used by taxonomy database
    other	-  ASN5: old-name (254) will be added to next spec
-->
<!ATTLIST OrgMod_subtype value (
        strain |
        substrain |
        type |
        subtype |
        variety |
        serotype |
        serogroup |
        serovar |
        cultivar |
        pathovar |
        chemovar |
        biovar |
        biotype |
        group |
        subgroup |
        isolate |
        common |
        acronym |
        dosage |
        nat-host |
        sub-species |
        specimen-voucher |
        authority |
        forma |
        forma-specialis |
        ecotype |
        synonym |
        anamorph |
        teleomorph |
        breed |
        gb-acronym |
        gb-anamorph |
        gb-synonym |
        culture-collection |
        bio-material |
        metagenome-source |
        old-lineage |
        old-name |
        other
        ) #IMPLIED >


<!ELEMENT OrgMod_subname (#PCDATA)>

<!-- attribution/source of name -->
<!ELEMENT OrgMod_attrib (#PCDATA)>


<!ELEMENT BinomialOrgName (
        BinomialOrgName_genus, 
        BinomialOrgName_species?, 
        BinomialOrgName_subspecies?)>

<!-- required -->
<!ELEMENT BinomialOrgName_genus (#PCDATA)>

<!-- species required if subspecies used -->
<!ELEMENT BinomialOrgName_species (#PCDATA)>

<!ELEMENT BinomialOrgName_subspecies (#PCDATA)>

<!-- the first will be used to assign division -->
<!ELEMENT MultiOrgName (OrgName*)>

<!-- when we don't know the genus -->
<!ELEMENT PartialOrgName (TaxElement*)>


<!ELEMENT TaxElement (
        TaxElement_fixed-level, 
        TaxElement_level?, 
        TaxElement_name)>

<!ELEMENT TaxElement_fixed-level (%INTEGER;)>

<!--
    other	-  level must be set in string
-->
<!ATTLIST TaxElement_fixed-level value (
        other |
        family |
        order |
        class
        ) #IMPLIED >


<!ELEMENT TaxElement_level (#PCDATA)>

<!ELEMENT TaxElement_name (#PCDATA)>