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# Copyright (C) 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002,
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# Inc.
# This Makefile.in is free software; the Free Software Foundation
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              RNAup_cmdl.c  RNAup_cmdl.h\
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RNAsubopt_SOURCES = RNAsubopt_cmdl.c RNAsubopt.c
RNAalifold_SOURCES = RNAalifold_cmdl.c RNAalifold.c
RNAcofold_SOURCES = RNAcofold_cmdl.c RNAcofold.c
RNAup_SOURCES = RNAup_cmdl.c RNAup.c
RNALfold_SOURCES = RNALfold_cmdl.c RNALfold.c
RNALalifold_SOURCES = RNALalifold_cmdl.c RNALalifold.c
RNAplfold_SOURCES = RNAplfold_cmdl.c RNAplfold.c
RNAduplex_SOURCES = RNAduplex_cmdl.c RNAduplex.c
RNAaliduplex_SOURCES = RNAaliduplex_cmdl.c RNAaliduplex.c
RNAeval_SOURCES = RNAeval_cmdl.c RNAeval.c
RNAheat_SOURCES = RNAheat_cmdl.c RNAheat.c
RNA2Dfold_SOURCES = RNA2Dfold_cmdl.c RNA2Dfold.c
RNAparconv_SOURCES = RNAparconv_cmdl.c RNAparconv.c
RNAinverse_SOURCES = RNAinverse_cmdl.c RNAinverse.c
RNApaln_SOURCES = RNApaln_cmdl.c RNApaln.c
RNAplot_SOURCES = RNAplot_cmdl.c RNAplot.c
RNAPKplex_SOURCES = RNAPKplex_cmdl.c RNAPKplex.c
RNAplex_SOURCES = RNAplex_cmdl.c RNAplex.c
RNAsnoop_SOURCES = RNAsnoop_cmdl.c RNAsnoop.c
RNAdistance_SOURCES = RNAdistance_cmdl.c RNAdistance.c
RNApdist_SOURCES = RNApdist_cmdl.c RNApdist.c
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	$(AM_V_CCLD)$(LINK) $(RNAaliduplex_OBJECTS) $(RNAaliduplex_LDADD) $(LIBS)
RNAalifold$(EXEEXT): $(RNAalifold_OBJECTS) $(RNAalifold_DEPENDENCIES) 
	@rm -f RNAalifold$(EXEEXT)
	$(AM_V_CCLD)$(LINK) $(RNAalifold_OBJECTS) $(RNAalifold_LDADD) $(LIBS)
RNAcofold$(EXEEXT): $(RNAcofold_OBJECTS) $(RNAcofold_DEPENDENCIES) 
	@rm -f RNAcofold$(EXEEXT)
	$(AM_V_CCLD)$(LINK) $(RNAcofold_OBJECTS) $(RNAcofold_LDADD) $(LIBS)
RNAdistance$(EXEEXT): $(RNAdistance_OBJECTS) $(RNAdistance_DEPENDENCIES) 
	@rm -f RNAdistance$(EXEEXT)
	$(AM_V_CCLD)$(LINK) $(RNAdistance_OBJECTS) $(RNAdistance_LDADD) $(LIBS)
RNAduplex$(EXEEXT): $(RNAduplex_OBJECTS) $(RNAduplex_DEPENDENCIES) 
	@rm -f RNAduplex$(EXEEXT)
	$(AM_V_CCLD)$(LINK) $(RNAduplex_OBJECTS) $(RNAduplex_LDADD) $(LIBS)
RNAeval$(EXEEXT): $(RNAeval_OBJECTS) $(RNAeval_DEPENDENCIES) 
	@rm -f RNAeval$(EXEEXT)
	$(AM_V_CCLD)$(LINK) $(RNAeval_OBJECTS) $(RNAeval_LDADD) $(LIBS)
RNAfold$(EXEEXT): $(RNAfold_OBJECTS) $(RNAfold_DEPENDENCIES) 
	@rm -f RNAfold$(EXEEXT)
	$(AM_V_CCLD)$(LINK) $(RNAfold_OBJECTS) $(RNAfold_LDADD) $(LIBS)
RNAheat$(EXEEXT): $(RNAheat_OBJECTS) $(RNAheat_DEPENDENCIES) 
	@rm -f RNAheat$(EXEEXT)
	$(AM_V_CCLD)$(LINK) $(RNAheat_OBJECTS) $(RNAheat_LDADD) $(LIBS)
RNAinverse$(EXEEXT): $(RNAinverse_OBJECTS) $(RNAinverse_DEPENDENCIES) 
	@rm -f RNAinverse$(EXEEXT)
	$(AM_V_CCLD)$(LINK) $(RNAinverse_OBJECTS) $(RNAinverse_LDADD) $(LIBS)
RNApaln$(EXEEXT): $(RNApaln_OBJECTS) $(RNApaln_DEPENDENCIES) 
	@rm -f RNApaln$(EXEEXT)
	$(AM_V_CCLD)$(LINK) $(RNApaln_OBJECTS) $(RNApaln_LDADD) $(LIBS)
RNAparconv$(EXEEXT): $(RNAparconv_OBJECTS) $(RNAparconv_DEPENDENCIES) 
	@rm -f RNAparconv$(EXEEXT)
	$(AM_V_CCLD)$(LINK) $(RNAparconv_OBJECTS) $(RNAparconv_LDADD) $(LIBS)
RNApdist$(EXEEXT): $(RNApdist_OBJECTS) $(RNApdist_DEPENDENCIES) 
	@rm -f RNApdist$(EXEEXT)
	$(AM_V_CCLD)$(LINK) $(RNApdist_OBJECTS) $(RNApdist_LDADD) $(LIBS)
RNAplex$(EXEEXT): $(RNAplex_OBJECTS) $(RNAplex_DEPENDENCIES) 
	@rm -f RNAplex$(EXEEXT)
	$(AM_V_CCLD)$(LINK) $(RNAplex_OBJECTS) $(RNAplex_LDADD) $(LIBS)
RNAplfold$(EXEEXT): $(RNAplfold_OBJECTS) $(RNAplfold_DEPENDENCIES) 
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	$(AM_V_CCLD)$(LINK) $(RNAplot_OBJECTS) $(RNAplot_LDADD) $(LIBS)
RNAsnoop$(EXEEXT): $(RNAsnoop_OBJECTS) $(RNAsnoop_DEPENDENCIES) 
	@rm -f RNAsnoop$(EXEEXT)
	$(AM_V_CCLD)$(LINK) $(RNAsnoop_OBJECTS) $(RNAsnoop_LDADD) $(LIBS)
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	@rm -f RNAsubopt$(EXEEXT)
	$(AM_V_CCLD)$(LINK) $(RNAsubopt_OBJECTS) $(RNAsubopt_LDADD) $(LIBS)
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	@rm -f RNAup$(EXEEXT)
	$(AM_V_CCLD)$(LINK) $(RNAup_OBJECTS) $(RNAup_LDADD) $(LIBS)

mostlyclean-compile:
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distclean-compile:
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# remove all generated man pages
maintainer-clean-local:
	rm -rf $(GENGETOPT_CMDL)

RNAfold.c:    RNAfold_cmdl.h

RNAfold_cmdl.h  RNAfold_cmdl.c: RNAfold.ggo
	gengetopt -i RNAfold.ggo

RNAsubopt.c:    RNAsubopt_cmdl.h

RNAsubopt_cmdl.h  RNAsubopt_cmdl.c: RNAsubopt.ggo
	gengetopt -i RNAsubopt.ggo

RNAalifold.c:    RNAalifold_cmdl.h

RNAalifold_cmdl.h  RNAalifold_cmdl.c: RNAalifold.ggo
	gengetopt -i RNAalifold.ggo

RNAcofold.c:    RNAcofold_cmdl.h

RNAcofold_cmdl.h  RNAcofold_cmdl.c: RNAcofold.ggo
	gengetopt -i RNAcofold.ggo

RNAup.c:        RNAup_cmdl.h

RNAup_cmdl.h  RNAup_cmdl.c: RNAup.ggo
	gengetopt -i RNAup.ggo

RNALfold.c:       RNALfold_cmdl.h

RNALfold_cmdl.h  RNALfold_cmdl.c: RNALfold.ggo
	gengetopt -i RNALfold.ggo

RNALalifold.c:      RNALalifold_cmdl.h

RNALalifold_cmdl.h  RNALalifold_cmdl.c: RNALalifold.ggo
	gengetopt -i RNALalifold.ggo

RNAplfold.c:      RNAplfold_cmdl.h

RNAplfold_cmdl.h  RNAplfold_cmdl.c: RNAplfold.ggo
	gengetopt -i RNAplfold.ggo

RNAduplex.c:      RNAduplex_cmdl.h

RNAduplex_cmdl.h  RNAduplex_cmdl.c: RNAduplex.ggo
	gengetopt -i RNAduplex.ggo

RNAaliduplex.c:   RNAaliduplex_cmdl.h

RNAaliduplex_cmdl.h  RNAaliduplex_cmdl.c: RNAaliduplex.ggo
	gengetopt -i RNAaliduplex.ggo

RNAeval.c:   RNAeval_cmdl.h

RNAeval_cmdl.h  RNAeval_cmdl.c: RNAeval.ggo
	gengetopt -i RNAeval.ggo

RNAheat.c:   RNAheat_cmdl.h

RNAheat_cmdl.h  RNAheat_cmdl.c: RNAheat.ggo
	gengetopt -i RNAheat.ggo

RNA2Dfold.c:    RNA2Dfold_cmdl.h

RNA2Dfold_cmdl.h  RNA2Dfold_cmdl.c: RNA2Dfold.ggo
	gengetopt -i RNA2Dfold.ggo

RNAparconv.c:    RNAparconv_cmdl.h

RNAparconv_cmdl.h  RNAparconv_cmdl.c: RNAparconv.ggo
	gengetopt -i RNAparconv.ggo

RNAinverse.c:   RNAinverse_cmdl.h

RNAinverse_cmdl.h  RNAinverse_cmdl.c: RNAinverse.ggo
	gengetopt -i RNAinverse.ggo

RNApaln.c:   RNApaln_cmdl.h

RNApaln_cmdl.h  RNApaln_cmdl.c: RNApaln.ggo
	gengetopt -i RNApaln.ggo

RNAplot.c:   RNAplot_cmdl.h

RNAplot_cmdl.h  RNAplot_cmdl.c: RNAplot.ggo
	gengetopt -i RNAplot.ggo

RNAPKplex.c:    RNAPKplex_cmdl.h

RNAPKplex_cmdl.h  RNAPKplex_cmdl.c: RNAPKplex.ggo
	gengetopt -i RNAPKplex.ggo

RNAplex.c:    RNAplex_cmdl.h

RNAplex_cmdl.h  RNAplex_cmdl.c: RNAplex.ggo
	gengetopt -i RNAplex.ggo

RNAsnoop.c:    RNAsnoop_cmdl.h

RNAsnoop_cmdl.h  RNAsnoop_cmdl.c: RNAsnoop.ggo
	gengetopt -i RNAsnoop.ggo

RNAdistance.c:    RNAdistance_cmdl.h

RNAdistance_cmdl.h  RNAdistance_cmdl.c: RNAdistance.ggo
	gengetopt -i RNAdistance.ggo

RNApdist.c:    RNApdist_cmdl.h

RNApdist_cmdl.h  RNApdist_cmdl.c: RNApdist.ggo
	gengetopt -i RNApdist.ggo

# Tell versions [3.59,3.63) of GNU make to not export all variables.
# Otherwise a system limit (for SysV at least) may be exceeded.
.NOEXPORT:
