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| Name | Last modified | Size | Description |
|---|---|---|---|---|
| Parent Directory | - | ||
| BAMbinSortByCoordinate.cpp | 2014-08-29 14:25 | 2.2K | |
| BAMbinSortByCoordinate.h | 2014-08-29 14:25 | 291 | |
| BAMbinSortByCoordinate.o | 2014-09-04 04:58 | 16K | |
| BAMfunctions.cpp | 2014-08-29 14:25 | 1.4K | |
| BAMfunctions.h | 2014-08-29 14:25 | 237 | |
| BAMfunctions.o | 2014-09-04 04:55 | 3.3K | |
| BAMoutput.cpp | 2014-08-29 14:25 | 3.2K | |
| BAMoutput.h | 2014-08-29 14:25 | 1.1K | |
| BAMoutput.o | 2014-09-04 04:55 | 10K | |
| CHANGES | 2014-08-29 14:25 | 5.7K | |
| Depend.list | 2014-09-04 04:08 | 12K | |
| ErrorWarning.cpp | 2014-08-29 14:25 | 653 | |
| ErrorWarning.h | 2014-08-29 14:25 | 213 | |
| ErrorWarning.o | 2014-09-04 04:49 | 4.6K | |
| Genome.cpp | 2014-08-29 14:25 | 21K | |
| Genome.h | 2014-08-29 14:25 | 442 | |
| Genome.o | 2014-09-04 04:17 | 69K | |
| GlobalVariables.cpp | 2014-08-29 14:25 | 76 | |
| GlobalVariables.h | 2014-08-29 14:25 | 157 | |
| InOutStreams.cpp | 2014-08-29 14:25 | 944 | |
| InOutStreams.h | 2014-08-29 14:25 | 548 | |
| InOutStreams.o | 2014-09-04 04:16 | 14K | |
| IncludeDefine.h | 2014-08-29 14:25 | 4.7K | |
| LICENSE | 2014-08-29 14:25 | 668 | |
| Mac_Include/ | 2014-08-29 14:25 | - | |
| Makefile | 2014-08-29 14:25 | 3.9K | |
| OutSJ.cpp | 2014-08-29 14:25 | 4.1K | |
| OutSJ.h | 2014-08-29 14:25 | 1.4K | |
| OutSJ.o | 2014-09-04 04:29 | 17K | |
| PackedArray.cpp | 2014-08-29 14:25 | 630 | |
| PackedArray.h | 2014-08-29 14:25 | 690 | |
| PackedArray.o | 2014-09-04 04:09 | 2.7K | |
| ParameterInfo.h | 2014-08-29 14:25 | 3.2K | |
| Parameters.cpp | 2014-08-29 14:25 | 53K | |
| Parameters.h | 2014-08-29 14:25 | 9.1K | |
| Parameters.o | 2014-09-04 04:14 | 267K | |
| README | 2014-08-29 14:25 | 738 | |
| ReadAlign.cpp | 2014-08-29 14:25 | 4.2K | |
| ReadAlign.h | 2014-08-29 14:25 | 6.6K | |
| ReadAlign.o | 2014-09-04 04:19 | 19K | |
| ReadAlignChunk.cpp | 2014-08-29 14:25 | 5.2K | |
| ReadAlignChunk.h | 2014-08-29 14:25 | 1.4K | |
| ReadAlignChunk.o | 2014-09-04 04:26 | 31K | |
| ReadAlignChunk_mapChunk.cpp | 2014-08-29 14:25 | 6.1K | |
| ReadAlignChunk_mapChunk.o | 2014-09-04 04:28 | 29K | |
| ReadAlignChunk_processChunks.cpp | 2014-08-29 14:25 | 10K | |
| ReadAlignChunk_processChunks.o | 2014-09-04 04:28 | 17K | |
| ReadAlign_alignBAM.cpp | 2014-08-29 14:25 | 19K | |
| ReadAlign_alignBAM.o | 2014-09-04 04:58 | 23K | |
| ReadAlign_assignAlignToWindow.cpp | 2014-08-29 14:25 | 5.3K | |
| ReadAlign_assignAlignToWindow.o | 2014-09-04 04:41 | 5.2K | |
| ReadAlign_chimericDetection.cpp | 2014-08-29 14:25 | 19K | |
| ReadAlign_chimericDetection.o | 2014-09-04 04:44 | 11K | |
| ReadAlign_createExtendWindowsWithAlign.cpp | 2014-08-29 14:25 | 3.5K | |
| ReadAlign_createExtendWindowsWithAlign.o | 2014-09-04 04:39 | 3.1K | |
| ReadAlign_mapOneRead.cpp | 2014-08-29 14:25 | 4.3K | |
| ReadAlign_mapOneRead.o | 2014-09-04 04:24 | 4.6K | |
| ReadAlign_maxMappableLength2strands.cpp | 2014-08-29 14:25 | 4.2K | |
| ReadAlign_maxMappableLength2strands.o | 2014-09-04 04:33 | 9.3K | |
| ReadAlign_multMapSelect.cpp | 2014-08-29 14:25 | 2.5K | |
| ReadAlign_multMapSelect.o | 2014-09-04 04:23 | 12K | |
| ReadAlign_oneRead.cpp | 2014-08-29 14:25 | 3.5K | |
| ReadAlign_oneRead.o | 2014-09-04 04:42 | 15K | |
| ReadAlign_outputAlignments.cpp | 2014-08-29 14:25 | 7.2K | |
| ReadAlign_outputAlignments.o | 2014-09-04 04:35 | 11K | |
| ReadAlign_outputTranscriptCIGARp.cpp | 2014-08-29 14:25 | 2.9K | |
| ReadAlign_outputTranscriptCIGARp.o | 2014-09-04 04:38 | 7.0K | |
| ReadAlign_outputTranscriptSAM.cpp | 2014-08-29 14:25 | 12K | |
| ReadAlign_outputTranscriptSAM.o | 2014-09-04 04:36 | 28K | |
| ReadAlign_outputTranscriptSJ.cpp | 2014-08-29 14:25 | 3.2K | |
| ReadAlign_outputTranscriptSJ.o | 2014-09-04 04:38 | 2.9K | |
| ReadAlign_quantTranscriptome.cpp | 2014-08-29 14:25 | 3.0K | |
| ReadAlign_quantTranscriptome.o | 2014-09-04 04:52 | 4.7K | |
| ReadAlign_stitchPieces.cpp | 2014-08-29 14:25 | 19K | |
| ReadAlign_stitchPieces.o | 2014-09-04 04:22 | 15K | |
| ReadAlign_stitchWindowSeeds.cpp | 2014-08-29 14:25 | 8.9K | |
| ReadAlign_stitchWindowSeeds.o | 2014-09-04 04:43 | 5.4K | |
| ReadAlign_storeAligns.cpp | 2014-08-29 14:25 | 2.4K | |
| ReadAlign_storeAligns.o | 2014-09-04 04:20 | 8.2K | |
| STAR | 2014-09-04 05:25 | 1.7M | |
| STAR.cpp | 2014-08-29 14:25 | 13K | |
| STAR.o | 2014-09-04 04:13 | 63K | |
| STARstatic | 2014-09-04 05:26 | 3.9M | |
| SequenceFuns.cpp | 2014-08-29 14:25 | 6.1K | |
| SequenceFuns.h | 2014-08-29 14:25 | 745 | |
| SequenceFuns.o | 2014-09-04 04:16 | 8.2K | |
| SjdbClass.h | 2014-08-29 14:25 | 214 | |
| Stats.cpp | 2014-08-29 14:25 | 7.6K | |
| Stats.h | 2014-08-29 14:25 | 1.1K | |
| Stats.o | 2014-09-04 04:18 | 20K | |
| SuffixArrayFuns.cpp | 2014-08-29 14:25 | 4.9K | |
| SuffixArrayFuns.o | 2014-09-04 04:10 | 6.2K | |
| SuffixArraysFuns.h | 2014-08-29 14:25 | 708 | |
| ThreadControl.cpp | 2014-08-29 14:25 | 159 | |
| ThreadControl.h | 2014-08-29 14:25 | 628 | |
| ThreadControl.o | 2014-09-04 04:31 | 2.2K | |
| TimeFunctions.cpp | 2014-08-29 14:25 | 581 | |
| TimeFunctions.h | 2014-08-29 14:25 | 168 | |
| TimeFunctions.o | 2014-09-04 04:48 | 3.5K | |
| Transcript.cpp | 2014-08-29 14:25 | 783 | |
| Transcript.h | 2014-08-29 14:25 | 2.5K | |
| Transcript.o | 2014-09-04 04:18 | 2.9K | |
| Transcriptome.cpp | 2014-08-29 14:25 | 1.1K | |
| Transcriptome.h | 2014-08-29 14:25 | 1.0K | |
| Transcriptome.o | 2014-09-04 04:50 | 12K | |
| Transcriptome_quantAlign.cpp | 2014-08-29 14:25 | 4.6K | |
| Transcriptome_quantAlign.o | 2014-09-04 04:51 | 5.1K | |
| alignSmithWaterman.cpp | 2014-08-29 14:25 | 4.5K | |
| alignSmithWaterman.h | 2014-08-29 14:25 | 217 | |
| alignSmithWaterman.o | 2014-09-04 04:47 | 4.3K | |
| bam_cat.c | 2014-08-29 14:25 | 4.5K | |
| bam_cat.o | 2014-09-04 04:59 | 4.9K | |
| binarySearch2.cpp | 2014-08-29 14:25 | 913 | |
| binarySearch2.h | 2014-08-29 14:25 | 150 | |
| binarySearch2.o | 2014-09-04 04:34 | 2.5K | |
| blocksOverlap.cpp | 2014-08-29 14:25 | 1.3K | |
| blocksOverlap.h | 2014-08-29 14:25 | 168 | |
| blocksOverlap.o | 2014-09-04 04:30 | 2.4K | |
| extendAlign.cpp | 2014-08-29 14:25 | 2.4K | |
| extendAlign.h | 2014-08-29 14:25 | 184 | |
| extendAlign.o | 2014-09-04 04:46 | 3.2K | |
| genomeGenerate.cpp | 2014-08-29 14:25 | 39K | |
| genomeGenerate.h | 2014-08-29 14:25 | 62 | |
| genomeGenerate.o | 2014-09-04 04:48 | 147K | |
| htslib/ | 2014-09-04 03:28 | - | |
| loadGTF.cpp | 2014-08-29 14:25 | 10K | |
| loadGTF.h | 2014-08-29 14:25 | 145 | |
| loadGTF.o | 2014-09-04 04:49 | 53K | |
| outputSJ.cpp | 2014-08-29 14:25 | 6.4K | |
| outputSJ.h | 2014-08-29 14:25 | 105 | |
| outputSJ.o | 2014-09-04 04:30 | 10K | |
| parametersDefault | 2014-08-29 14:25 | 20K | |
| parametersDefault.xxd | 2014-08-29 14:25 | 122K | |
| readLoad.cpp | 2014-08-29 14:25 | 7.1K | |
| readLoad.h | 2014-08-29 14:25 | 422 | |
| readLoad.o | 2014-09-04 04:25 | 25K | |
| serviceFuns.cpp | 2014-08-29 14:25 | 1.3K | |
| signalFromBAM.cpp | 2014-08-29 14:25 | 7.3K | |
| signalFromBAM.h | 2014-08-29 14:25 | 323 | |
| signalFromBAM.o | 2014-09-04 04:59 | 12K | |
| sjSplitAlign.cpp | 2014-08-29 14:25 | 504 | |
| stitchAlignToTranscript.cpp | 2014-08-29 14:25 | 19K | |
| stitchAlignToTranscript.h | 2014-08-29 14:25 | 288 | |
| stitchAlignToTranscript.o | 2014-09-04 04:46 | 9.0K | |
| stitchGapIndel.cpp | 2014-08-29 14:25 | 2.0K | |
| stitchWindowAligns.cpp | 2014-08-29 14:25 | 16K | |
| stitchWindowAligns.h | 2014-08-29 14:25 | 546 | |
| stitchWindowAligns.o | 2014-09-04 04:45 | 12K | |
| streamFuns.cpp | 2014-08-29 14:25 | 719 | |
| streamFuns.h | 2014-08-29 14:25 | 208 | |
| streamFuns.o | 2014-09-04 04:50 | 2.2K | |
| stringSubstituteAll.cpp | 2014-08-29 14:25 | 413 | |
| stringSubstituteAll.h | 2014-08-29 14:25 | 178 | |
| stringSubstituteAll.o | 2014-09-04 04:50 | 1.9K | |
| sysRemoveDir.cpp | 2014-08-29 14:25 | 587 | |
| sysRemoveDir.h | 2014-08-29 14:25 | 117 | |
| sysRemoveDir.o | 2014-09-04 04:32 | 1.7K | |