Ñò à~,Jc @sµddkZddkZddkZddkZddkTddkTddklZddkZei ƒZ dZ dZ ei dƒZei dƒZd„Zd „Zd „ZdS( iÿÿÿÿN(t*(t OptionParsers /bin/greps/bin/cats\+s\-c Csnxg|D]_}|d}||}y+tidt|||fƒo‚nWqtiidƒqXqWdS(Ns [[:space:]]s %s %s %s > %ss grep failed (tostsystemtgreptsyststderrtwrite(tchromstfilet extensiontchromtmatchttmpFile((sK/woldlab/castor/data00/home/georgi/SICER_v1.01/SICER/lib/SeparateByChrom.pytseparateByChrom"s    c Cszt|dƒ}|iƒxZ|D]R}||}y(tidt||fƒo‚nWq tiidƒq Xq W|S(sN Combine the seperately processed chromosomes, return the output file name tws %s %s >> %ss cat failed (topentcloseRRtcatRRR(RR t final_outtoutfileR R ((sK/woldlab/castor/data00/home/georgi/SICER_v1.01/SICER/lib/SeparateByChrom.pytcombineAllGraphFiles,s    cCsXxQ|D]I}||}ytid|ƒo‚nWqtiidƒqXqWdS(Ns%ssclean up failed (RtremoveRRR(RR R R ((sK/woldlab/castor/data00/home/georgi/SICER_v1.01/SICER/lib/SeparateByChrom.pytcleanup<s   (treRRtshutiltmathtstringtoptparseRtoperatortgetcwdtDirRRtcompiletplustminusRRR(((sK/woldlab/castor/data00/home/georgi/SICER_v1.01/SICER/lib/SeparateByChrom.pyts0