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| Name | Last modified | Size | Description |
|---|---|---|---|---|
| Parent Directory | - | ||
| AlignerRefSeqPolicy.h | 2016-10-02 14:34 | 383 | |
| BamConverter.h | 2016-10-02 14:34 | 8.5K | |
| BamWriter.h | 2016-10-02 14:34 | 3.7K | |
| Buffer.h | 2016-10-02 14:34 | 2.0K | |
| COPYING | 2016-10-02 14:34 | 34K | |
| EBSeq/ | 2016-10-02 14:34 | - | |
| EM.cpp | 2016-10-02 14:34 | 19K | |
| EM.o | 2017-05-31 19:59 | 920K | |
| GTFItem.h | 2016-10-02 14:34 | 5.9K | |
| Gibbs.cpp | 2016-10-02 14:34 | 13K | |
| Gibbs.o | 2017-05-31 19:59 | 685K | |
| GroupInfo.h | 2016-10-02 14:34 | 1.1K | |
| HitContainer.h | 2016-10-02 14:34 | 2.6K | |
| HitWrapper.h | 2016-10-02 14:34 | 618 | |
| LenDist.h | 2016-10-02 14:34 | 6.7K | |
| Makefile | 2016-10-02 14:34 | 8.7K | |
| Model.h | 2016-10-02 14:34 | 75 | |
| ModelParams.h | 2016-10-02 14:34 | 737 | |
| NoiseProfile.h | 2016-10-02 14:34 | 3.1K | |
| NoiseQProfile.h | 2016-10-02 14:34 | 4.2K | |
| Orientation.h | 2016-10-02 14:34 | 753 | |
| PairedEndHit.h | 2016-10-02 14:34 | 682 | |
| PairedEndModel.h | 2016-10-02 14:34 | 12K | |
| PairedEndQModel.h | 2016-10-02 14:34 | 13K | |
| PairedEndRead.h | 2016-10-02 14:34 | 1.8K | |
| PairedEndReadQ.h | 2016-10-02 14:34 | 1.8K | |
| PolyARules.h | 2016-10-02 14:34 | 1.3K | |
| Profile.h | 2016-10-02 14:34 | 5.2K | |
| QProfile.h | 2016-10-02 14:34 | 5.1K | |
| QualDist.h | 2016-10-02 14:34 | 3.2K | |
| README.md | 2016-10-02 14:34 | 33K | |
| RSPD.h | 2016-10-02 14:34 | 4.3K | |
| Read.h | 2016-10-02 14:34 | 722 | |
| ReadIndex.h | 2016-10-02 14:34 | 1.2K | |
| ReadReader.h | 2016-10-02 14:34 | 2.7K | |
| RefSeq.h | 2016-10-02 14:34 | 3.3K | |
| RefSeqPolicy.h | 2016-10-02 14:34 | 457 | |
| Refs.h | 2016-10-02 14:34 | 4.1K | |
| SamHeader.cpp | 2016-10-02 14:34 | 3.2K | |
| SamHeader.hpp | 2016-10-02 14:34 | 1.9K | |
| SamHeader.o | 2017-05-31 19:59 | 34K | |
| SamParser.h | 2016-10-02 14:34 | 9.6K | |
| SingleHit.h | 2016-10-02 14:34 | 1.0K | |
| SingleModel.h | 2016-10-02 14:34 | 14K | |
| SingleQModel.h | 2016-10-02 14:34 | 15K | |
| SingleRead.h | 2016-10-02 14:34 | 2.4K | |
| SingleReadQ.h | 2016-10-02 14:34 | 2.6K | |
| Transcript.h | 2016-10-02 14:34 | 4.3K | |
| Transcripts.h | 2016-10-02 14:34 | 3.9K | |
| WHAT_IS_NEW | 2016-10-02 14:34 | 18K | |
| WriteResults.h | 2016-10-02 14:34 | 21K | |
| bam2readdepth.cpp | 2016-10-02 14:34 | 511 | |
| bam2readdepth.o | 2017-05-31 19:59 | 8.5K | |
| bam2wig.cpp | 2016-10-02 14:34 | 1.2K | |
| bam2wig.o | 2017-05-31 19:59 | 4.8K | |
| bc_aux.h | 2016-10-02 14:34 | 2.7K | |
| boost/ | 2016-10-02 14:34 | - | |
| buildReadIndex.cpp | 2016-10-02 14:34 | 1.7K | |
| buildReadIndex.o | 2017-05-31 19:58 | 15K | |
| calcCI.cpp | 2016-10-02 14:34 | 15K | |
| calcCI.o | 2017-05-31 19:59 | 711K | |
| cnt_file_description.txt | 2016-10-02 14:34 | 1.4K | |
| convert-sam-for-rsem | 2016-10-02 14:34 | 2.8K | |
| extract-transcript-to-gene-map-from-trinity | 2016-10-02 14:34 | 791 | |
| extractRef.cpp | 2016-10-02 14:34 | 9.8K | |
| extractRef.o | 2017-05-31 19:58 | 179K | |
| getUnique.cpp | 2016-10-02 14:34 | 1.7K | |
| getUnique.o | 2017-05-31 19:59 | 65K | |
| model_file_description.txt | 2016-10-02 14:34 | 4.6K | |
| my_assert.h | 2016-10-02 14:34 | 3.6K | |
| pRSEM/ | 2016-10-02 14:34 | - | |
| parseIt.cpp | 2016-10-02 14:34 | 5.4K | |
| parseIt.o | 2017-05-31 19:58 | 172K | |
| preRef.cpp | 2016-10-02 14:34 | 2.4K | |
| preRef.o | 2017-05-31 19:58 | 57K | |
| rsem-bam2readdepth | 2017-05-31 19:59 | 1.5M | |
| rsem-bam2wig | 2017-05-31 19:59 | 1.5M | |
| rsem-build-read-index | 2017-05-31 19:58 | 22K | |
| rsem-calculate-credibility-intervals | 2017-05-31 19:59 | 411K | |
| rsem-calculate-expression | 2016-10-02 14:34 | 71K | |
| rsem-control-fdr | 2016-10-02 14:34 | 3.3K | |
| rsem-extract-reference-transcripts | 2017-05-31 19:58 | 109K | |
| rsem-gen-transcript-plots | 2016-10-02 14:34 | 5.5K | |
| rsem-generate-data-matrix | 2016-10-02 14:34 | 1.9K | |
| rsem-generate-ngvector | 2016-10-02 14:34 | 3.4K | |
| rsem-get-unique | 2017-05-31 19:59 | 1.5M | |
| rsem-gff3-to-gtf | 2016-10-02 14:34 | 9.1K | |
| rsem-parse-alignments | 2017-05-31 19:59 | 1.5M | |
| rsem-plot-model | 2016-10-02 14:34 | 5.7K | |
| rsem-plot-transcript-wiggles | 2016-10-02 14:34 | 6.6K | |
| rsem-prepare-reference | 2016-10-02 14:34 | 21K | |
| rsem-preref | 2017-05-31 19:58 | 45K | |
| rsem-refseq-extract-primary-assembly | 2016-10-02 14:34 | 495 | |
| rsem-run-ebseq | 2016-10-02 14:34 | 6.5K | |
| rsem-run-em | 2017-05-31 19:59 | 2.0M | |
| rsem-run-gibbs | 2017-05-31 19:59 | 396K | |
| rsem-run-prsem-testing-procedure | 2016-10-02 14:34 | 13K | |
| rsem-sam-validator | 2017-05-31 19:59 | 1.5M | |
| rsem-scan-for-paired-end-reads | 2017-05-31 19:59 | 1.5M | |
| rsem-simulate-reads | 2017-05-31 19:58 | 383K | |
| rsem-synthesis-reference-transcripts | 2017-05-31 19:58 | 80K | |
| rsem-tbam2gbam | 2017-05-31 19:59 | 1.5M | |
| rsem_perl_utils.pm | 2016-10-02 14:34 | 3.7K | |
| samValidator.cpp | 2016-10-02 14:34 | 6.1K | |
| samValidator.o | 2017-05-31 19:59 | 71K | |
| sam_utils.h | 2016-10-02 14:34 | 5.6K | |
| sampling.h | 2016-10-02 14:34 | 1.7K | |
| samtools-1.3/ | 2017-05-31 19:59 | - | |
| scanForPairedEndReads.cpp | 2016-10-02 14:34 | 4.7K | |
| scanForPairedEndReads.o | 2017-05-31 19:59 | 78K | |
| simul.h | 2016-10-02 14:34 | 897 | |
| simulation.cpp | 2016-10-02 14:34 | 8.9K | |
| simulation.o | 2017-05-31 19:58 | 659K | |
| synthesisRef.cpp | 2016-10-02 14:34 | 6.2K | |
| synthesisRef.o | 2017-05-31 19:58 | 117K | |
| tbam2gbam.cpp | 2016-10-02 14:34 | 884 | |
| tbam2gbam.o | 2017-05-31 19:59 | 114K | |
| utils.h | 2016-10-02 14:34 | 3.9K | |
| wiggle.cpp | 2016-10-02 14:34 | 3.9K | |
| wiggle.h | 2016-10-02 14:34 | 1.0K | |
| wiggle.o | 2017-05-31 19:59 | 73K | |