ó
Ý1`Zc           @   sú   d  d l  Z  e  j d ƒ d  d l Z d  d l  m Z d  d l j Z d  d l  m Z d d d d d d d d d d d „
 Z
 d d d	 d
 d d d g d d d d d d d d d d d d d d d d d d d d d „ Z d d d d d d d d „ Z d S(   iÿÿÿÿNt   Agg(   t   pyplot(   t   cmt   seismici„  c         C   sâ  t  j ƒ  } t j d d d d d d d d d d	 ƒ} | j | d  d  … d
 d … f ƒ } | j | d  d  … d d … f ƒ } t j d |  j d
 |  j d f ƒ } d
 } x™ | |  j d
 k  rGt j |  | d  d  … f d ƒ | | d  d  … f <d t j t	 |  | d d  d  … f ƒ d ƒ | | d d  d  … f <| d 7} q¯ W| j
 | | | d t j d d t j	 | ƒ j ƒ  d t j	 | ƒ j ƒ  ƒ} | j | j ƒ  | j ƒ  | j ƒ  | j ƒ  g ƒ | j | d | d | ƒ| d  k r| j | d d d d ƒn  | d  k r.| j | d d d d ƒn  | d  k rV| j | d d d d ƒn  | d  k rr| j | ƒ n  |
 d  k rŽ| j |
 ƒ n | j g  ƒ | d  k r·| j d ƒ n  t  j | d | ƒt  j ƒ  t  j ƒ  d  S(   Nid   t   topg®Gázî?t   bottomg)\Âõ(¼?t   leftg{®Gáz¤?t   rightgÍÌÌÌÌÌì?i    i[   i]   ic   t   shapei   iÿÿÿÿi   t   cmapt   vmint   vmaxt   axt   caxt   fontsizei   t   weightt   boldi
   g      @t   dpi(   i
   g      @(   t   pltt   figuret   gridspect   GridSpect   add_subplott   npt   zerosR   t   logt   abst
   pcolormeshR   R   t   maxt   axist   mint   colorbart   Nonet	   set_titlet
   set_ylabelt
   set_xlabelt
   set_xtickst
   set_ytickst   set_size_inchest   savefigt   clft   close(   t   Et   xt   yt   outnamet   colort   titlet   xlabelt   ylabelt   xtickst   xticklabelst   ytickst   yticklabelst   figsizet
   resolutiont   figt   gsR   t   axCt   E_newt   indt   quadmesh(    (    sG   /oak/stanford/groups/akundaje/marinovg/programs/PeakXus/src/plotting.pyt   plotHeatMap   s:    *%%&3EL1      
t   rt   bt   gt   ct   mt   ki–   i   i   c         C   sþ  t  j ƒ  } | j d d d ƒ } x~ t d t | ƒ ƒ D]g } | d  k rp | j |  | | d | | d d ƒq7 | j |  | | d | | d d d | | ƒq7 Wt g  t d t | ƒ ƒ D] } t | | ƒ ^ q» ƒ } | d  k rVxm t d t | ƒ ƒ D]S } | j |  | | | | d | | | | d d d	 d
 | | d | | ƒqü Wn  | d k  rêg  }  d } x/ | | d k  rŸ|  j	 | | ƒ | d 7} qqWg  |  D] } | ^ q§} | j
 |  | d d d d d | d
 d  d d ƒn  | d  k r| j | ƒ n  |	 d  k r.| j |	 d d d d ƒn  | d  k rV| j | d d d d ƒn  | d  k rr| j | ƒ n  |
 d  k rŽ| j |
 ƒ n  | d  k rª| j d ƒ n  | d  k rÉ| j d d ƒ n  | d  k rå| j | ƒ n  | d  k r| j | ƒ n  | d  k rg| j t |  ƒ t |  ƒ d t g  t d t | ƒ ƒ D] } t | | ƒ ^ qAƒ g ƒ n  | d  k r˜t  j d d d | d t d t ƒ n  | d  k rÉt  j d d d | d t d t ƒ n  t  j ƒ  t  j | d | ƒt  j ƒ  t  j ƒ  d  S(   Ni   i    R.   t	   linewidthi   t   labelg      @t   alphagš™™™™™É?t	   edgecolort	   facecolort   widthRA   R   i   R   R   i   i   t   locs   upper rightR   R,   t   nbinst   tightt   trimR+   R   (   i   i   (   R   R   R   t   ranget   lenR    t   plotR   t   fill_betweent   appendt   barR!   R"   R#   R$   R%   R&   t   legendt
   set_yscalet
   set_xscaleR   R   t   locator_paramst   Truet   Falset   tight_layoutR'   R(   R)   (   R+   R,   R-   RU   t   colorsR/   R0   R2   R3   R1   R4   R5   R6   R7   t   opacityt   m_leftt   m_lent   errorbart   yscalet   xscalet   Nytickst   Nxtickst   xlimt   ylimt	   xrotationR8   R   t   it   maxy(    (    sG   /oak/stanford/groups/akundaje/marinovg/programs/PeakXus/src/plotting.pyt   plot1d2   s\     '28 T1          Z % %

c
         C   s;  t  j |  d | d t ƒ\ }
 } t j | d  |
 d | d | d | d d | d	 t t  j t  j |  ƒ ƒ ƒ d
 t t  j t  j |  ƒ ƒ ƒ ƒ| d  k r¯ t j
 | ƒ n  | d  k rË t j | ƒ n  t j d ƒ t j d d d d ƒ t j d d d d d d d t d t ƒ t j | ƒ t j ƒ  t j ƒ  d  S(   Nt   binst   densityiÿÿÿÿR.   RJ   i   i    RF   s   
mean=s   
median=gš™™™™™©?R   g{®Gáz´?R   g×£p=
×ë?RK   s   upper centert   bbox_to_anchorg      à?g¸…ëQ¸ò?t   ncolt   fancyboxt   shadow(   g      à?g¸…ëQ¸ò?(   R   t	   histogramRZ   R   RT   t   strt   meant   arrayt   medianR    R0   R1   t   marginst   subplots_adjustRU   RY   R'   R(   R)   (   t   dataRk   R-   R.   RU   R0   R1   R/   R6   R7   t   histt   edges(    (    sG   /oak/stanford/groups/akundaje/marinovg/programs/PeakXus/src/plotting.pyt   plotHistogram\   s    !r  (
(   t
   matplotlibt   uset   numpyR   R   R   t   matplotlib.gridspecR   R   R    R>   Rj   R{   (    (    (    sG   /oak/stanford/groups/akundaje/marinovg/programs/PeakXus/src/plotting.pyt   <module>   s   ']*