CTCF_replicate1.sorted.bam FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	CTCF_replicate1.sorted.bam
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	47690586
Sequences flagged as poor quality	0
Sequence length	48-49
%GC	51

Per base sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GGGCGGG	60655	0.0	9.090987	43
GGTCGGG	27110	0.0	7.124434	43
GGGGGGG	199975	0.0	6.697183	43
GTTCGGT	8475	0.0	6.561454	43
GGACGGG	27885	0.0	6.484962	43
GGCCGGG	52315	0.0	6.264113	43
GGGTGGG	53205	0.0	5.8322134	43
GCGCGGC	17725	0.0	5.819538	43
GGTCGGC	11355	0.0	5.383241	43
GGTCCGG	17985	0.0	5.3813705	43
GTGCGGT	12420	0.0	5.1950593	43
GGCGGGG	55800	0.0	5.1577935	43
GGGGGGT	37615	0.0	5.134744	43
GGGAGGG	71560	0.0	5.077757	43
GTTCGGG	11065	0.0	5.025605	43