LICENSE
MANIFEST.in
README.md
setup.cfg
setup.py
NucleoATAC.egg-info/PKG-INFO
NucleoATAC.egg-info/SOURCES.txt
NucleoATAC.egg-info/dependency_links.txt
NucleoATAC.egg-info/not-zip-safe
NucleoATAC.egg-info/pbr.json
NucleoATAC.egg-info/requires.txt
NucleoATAC.egg-info/top_level.txt
bin/nucleoatac
bin/pyatac
example/README.txt
example/example.Scores.bedgraph.gz
example/example.Scores.bedgraph.gz.tbi
example/example.VMat
example/example.bam
example/example.bam.bai
example/example.bed
example/example.slopped.bed
example/sacCer3.fa
example/sacCer3.fa.fai
example/single_read.bam
example/single_read.bam.bai
nucleoatac/Magic.py
nucleoatac/NFRCalling.py
nucleoatac/NucleosomeCalling.py
nucleoatac/Occupancy.py
nucleoatac/__init__.py
nucleoatac/cli.py
nucleoatac/diff_occ.py
nucleoatac/merge.py
nucleoatac/multinomial_cov.pyx
nucleoatac/run_nfr.py
nucleoatac/run_nuc.py
nucleoatac/run_occ.py
nucleoatac/run_vprocess.py
nucleoatac/vplot/__init__.py
nucleoatac/vplot/standard_vplot.VMat
pyatac/Magic.py
pyatac/VMat.py
pyatac/__init__.py
pyatac/bedgraph.py
pyatac/bias.py
pyatac/chunk.py
pyatac/chunkmat2d.py
pyatac/cli.py
pyatac/fragments.pyx
pyatac/fragments.pyxbld
pyatac/fragmentsizes.py
pyatac/get_counts.py
pyatac/get_cov.py
pyatac/get_ins.py
pyatac/get_nucleotide.py
pyatac/get_pwm.py
pyatac/get_sizes.py
pyatac/make_bias_track.py
pyatac/make_bias_vplot.py
pyatac/make_vplot.py
pyatac/seq.py
pyatac/signal_around_sites.py
pyatac/tracks.py
pyatac/utils.py
pyatac/pwm/Human.PWM.txt
pyatac/pwm/Human2.PWM.txt
pyatac/pwm/Yeast.PWM.txt
pyatac/pwm/__init__.py