Initialization Script Restrictions

4. GS Amplicon Variant Analyzer – Special Topics : 4.4 Automatic Project Initialization in the GUI : 4.4.3 Initialization Script Restrictions

4.4.3

Initialization Script Restrictions

Although the default initialization script can be edited and custom scripts can be nested within it (as illustrated by the call to the user’s home directory script), the default initialization script and any of the subordinate scripts are precluded from utilizing certain specific CLI commands. The excluded commands are:

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•	create project

•	any of the computation commands, such as computation start and computation stop

The reason for these exclusions is that automatic initialization is intended to work in the context of creating a new Project and leaving it in a state where more CLI commands can be issued. The banned commands would not make any sense in this context because they cause a switch to other Projects, shut down the Project, or attempt to prematurely compute the Project.