4. GS Amplicon Variant Analyzer – Special Topics
: 4.4 Automatic Project Initialization in the GUI
4.4
Automatic Project Initialization in the GUI
4.4.1 Default Initialization Script Location
4.4.2 Default Initialization Script Contents
4.4.3 Initialization Script Restrictions
4.4.4 Initialization Script Error Handling
When the “New” button in the AVA GUI is used to create a Project, an initialization script containing CLI-script commands is automatically carried out. This script is created as part of the software installation and is only automatically used when creating a new Project in the GUI; it is not used when opening pre-existing Projects and it is not automatically used when creating Projects via the CLI (section
4.5
).
The default initialization script that is provided with the AVA software serves two main purposes: it automatically loads the 454Standard MID Group, and it provides the ability to automatically call through to optional customized initialization scripts in the users’ home directories. The functionality of the initialization script is optional, and can be disabled by an administrator by commenting out actions in the script (by placing a pound character (‘#’) in front of commands). However, the script should not be deleted entirely, or a ‘missing’ file warning will be encountered each time a new Project is created via the GUI.
