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4. GS Amplicon Variant Analyzer – Special Topics : 4.3 Properties Windows for Global and Consensus Alignments
As described in sections 1.6.3.2 and 1.7.3, above, right-clicking on a nucleotide in the alignment on the Global Align or the Consensus Align tab opens a context-sensitive menu that includes a “properties” option. Selecting this option opens a “properties” window containing sequence-specific information for the Consensus or read on which you right-clicked. The specific information that is provided in this window depends on whether the sequence is a Consensus, a forward read or a reverse read.