Creating Samples

3. GS Amplicon Variant Analyzer Command Line Interface : 3.5 Creating and Computing a Project with the AVA-CLI : 3.5.6 Creating Samples

3.5.6

Creating Samples

Samples are easily created as they consist only of a name and an optional annotation. Samples are added using the “create sample” command (see section 3.4.4.8 for the usage statement). Below is an example creating 7 Samples, using a “here” table.

create sample -file - << HERE_TERMINATOR

"Name"        "Annotation"

"Sample1"     "Sample1"

"Sample2"     "Sample2"

"Sample3"     "Sample3"

"Sample4"     "Sample4"

"Sample5"     "Sample5"

"Sample6"     "Sample6"

"Sample7"     "Sample7"

HERE_TERMINATOR

The “create sample” command has an “-orUpdate” flag like the one discussed for the “create reference” example, above (section 3.5.3).