|
3.4.7
|
list <entity type> <other arguments>
The 'list' command is used to list information about project entities or
the project itself. The type of entity to list is determined by the
'<entity type>' argument. The '<other arguments>' are determined by the
entity type. For example, to list all amplicons in the currently open
project, you can run 'list amplicon'.
The following entities are available for listing. Run
'help list <entity type>' for more detailed information.
amplicon Lists amplicons in the currently open project.
mid Lists MIDs in the currently open project.
midGroup Lists MID groups in the currently open project.
multiplexer Lists multiplexers in the currently open project.
project Lists information about the currently open project.
readData Lists read data in the currently open project.
readGroup Lists read groups in the currently open project.
reference Lists reference sequences in the currently open project.
sample Lists samples in the currently open project.
variant Lists variants in the currently open project.
|
3.4.7.1
|
list amp[licon] [-outputFile <file>] [-format <table format>]
Lists all of the amplicons in the currently open project. The listing is
printed in the form of a table. The table has columns for the following.
Name The name of the amplicon.
Annotation The annotation for the amplicon.
Reference The reference sequence to which the amplicon refers.
Primer1 The first primer.
Primer2 The second primer.
Start The index of the start of the target in the reference
sequence.
End The index of the end of the target in the reference
sequence.
If no '-outputFile' option is given, the table is printed in a
tab-delimited format to the standard output of the interpreter. An output
file of "-" has the same effect. If an output file is given, the table is
written to that file. Run 'help general filePaths' for more information
about specifying files.
The '-format' option controls the format of the printed table. If "tsv", a
tab-delimited format is used. If "csv", a comma-delimited format is used.
By default, the tab-delimited format is used, unless an output file is
given with a ".csv" extension.
|
3.4.7.2
|
list mid [-outputFile <file>] [-format <table format>]
Lists all of the MIDs in the currently open project. The listing
is printed in the form of a table. The table has columns for the
following.
Name The name of the MID.
Annotation The annotation for the MID.
Sequence The nucleotide sequence of the MID.
MidGroup The MID group to which the MID belongs.
If no '-outputFile' option is given, the table is printed in a
tab-delimited format to the standard output of the interpreter. An output
file of "-" has the same effect. If an output file is given, the table is
written to that file. Run 'help general filePaths' for more information
about specifying files.
The '-format' option controls the format of the printed table. If "tsv", a
tab-delimited format is used. If "csv", a comma-delimited format is used.
By default, the tab-delimited format is used, unless an output file is
given with a ".csv" extension.
|
3.4.7.3
|
list midGroup [-outputFile <file>] [-format <table format>]
Lists all of the MID groups in the currently open project. The listing is
printed in the form of a table. The table has columns for the following.
Name The name of the MID group.
Annotation The annotation for the MID group.
If no '-outputFile' option is given, the table is printed in a
tab-delimited format to the standard output of the interpreter. An output
file of "-" has the same effect. If an output file is given, the table is
written to that file. Run 'help general filePaths' for more information
about specifying files.
The '-format' option controls the format of the printed table. If "tsv", a
tab-delimited format is used. If "csv", a comma-delimited format is used.
By default, the tab-delimited format is used, unless an output file is
given with a ".csv" extension.
|
3.4.7.4
|
list mul[tiplexer] [-outputFile <file>] [-format <table format>]
Lists all of the multiplexers in the currently open project. The listing
is printed in the form of a table. The table has columns for the
following.
Name The name of the multiplexer.
Annotation The annotation for the multiplexer.
Encoding The encoding type of the multiplexer (both, either,
primer1, or primer2).
If no '-outputFile' option is given, the table is printed in a
tab-delimited format to the standard output of the interpreter. An output
file of "-" has the same effect. If an output file is given, the table is
written to that file. Run 'help general filePaths' for more information
about specifying files.
The '-format' option controls the format of the printed table. If "tsv", a
tab-delimited format is used. If "csv", a comma-delimited format is used.
By default, the tab-delimited format is used, unless an output file is
given with a ".csv" extension.
|
3.4.7.5
|
list proj[ect] [-outputFile <file>] [-format <table format>]
Lists data about the currently open project. The listing is
printed in the form of a table. The table has columns for the following.
Path The directory path to the project.
Name The name for the project.
Annotation The annotation for the project.
If no '-outputFile' option is given, the table is printed in a
tab-delimited format to the standard output of the interpreter. An output
file of "-" has the same effect. If an output file is given, the table is
written to that file. Run 'help general filePaths' for more information
about specifying files.
The '-format' option controls the format of the printed table. If "tsv", a
tab-delimited format is used. If "csv", a comma-delimited format is used.
By default, the tab-delimited format is used, unless an output file is
given with a ".csv" extension.
|
3.4.7.6
|
list readData [-outputFile <file>] [-format <table format>]
Lists all of the read data in the currently open project. The listing is
printed in the form of a table. The table has columns for the following.
Name The name of the read data.
Annotation The annotation for the read data.
ReadGroup The read group to which the read data belongs.
SymLink Whether the read data is symbolically linked into the
project.
Active Whether the read data is active in the project.
SffDir The SFF directory from which the read data was
imported.
SffName The name of the SFF file of the read data.
If no '-outputFile' option is given, the table is printed in a
tab-delimited format to the standard output of the interpreter. An output
file of "-" has the same effect. If an output file is given, the table is
written to that file. Run 'help general filePaths' for more information
about specifying files.
The '-format' option controls the format of the printed table. If "tsv", a
tab-delimited format is used. If "csv", a comma-delimited format is used.
By default, the tab-delimited format is used, unless an output file is
given with a ".csv" extension.
|
3.4.7.7
|
list readGroup [-outputFile <file>] [-format <table format>]
Lists all of the read groups in the currently open project. The listing is
printed in the form of a table. The table has columns for the following.
Name The name of the read group.
Annotation The annotation for the read group.
If no '-outputFile' option is given, the table is printed in a
tab-delimited format to the standard output of the interpreter. An output
file of "-" has the same effect. If an output file is given, the table is
written to that file. Run 'help general filePaths' for more information
about specifying files.
The '-format' option controls the format of the printed table. If "tsv", a
tab-delimited format is used. If "csv", a comma-delimited format is used.
By default, the tab-delimited format is used, unless an output file is
given with a ".csv" extension.
|
3.4.7.8
|
list ref[erence] [-outputFile <file>] [-format <table format>]
Lists all of the reference sequences in the currently open project. The
listing is printed in the form of a table. The table has columns for the
following.
Name The name of the reference.
Annotation The annotation for the reference.
Sequence The nucleotide sequence of the reference.
If no '-outputFile' option is given, the table is printed in a
tab-delimited format to the standard output of the interpreter. An output
file of "-" has the same effect. If an output file is given, the table is
written to that file. Run 'help general filePaths' for more information
about specifying files.
The '-format' option controls the format of the printed table. If "tsv", a
tab-delimited format is used. If "csv", a comma-delimited format is used.
By default, the tab-delimited format is used, unless an output file is
given with a ".csv" extension.
|
3.4.7.9
|
list sam[ple] [-outputFile <file>] [-format <table format>]
Lists all of the samples in the currently open project. The listing is
printed in the form of a table. The table has columns for the following.
Name The name of the sample.
Annotation The annotation for the sample.
If no '-outputFile' option is given, the table is printed in a
tab-delimited format to the standard output of the interpreter. An output
file of "-" has the same effect. If an output file is given, the table is
written to that file. Run 'help general filePaths' for more information
about specifying files.
The '-format' option controls the format of the printed table. If "tsv", a
tab-delimited format is used. If "csv", a comma-delimited format is used.
By default, the tab-delimited format is used, unless an output file is
given with a ".csv" extension.
|
3.4.7.10
|
list var[iant] [-outputFile <file>] [-format <table format>]
Lists all of the variants in the currently open project. The listing is
printed in the form of a table. The table has columns for the following.
Name The name of the variant.
Annotation The annotation for the variant.
Reference The reference sequence to which the variant refers.
If no '-outputFile' option is given, the table is printed in a
tab-delimited format to the standard output of the interpreter. An output
file of "-" has the same effect. If an output file is given, the table is
written to that file. Run 'help general filePaths' for more information
about specifying files.
The '-format' option controls the format of the printed table. If "tsv", a
tab-delimited format is used. If "csv", a comma-delimited format is used.
By default, the tab-delimited format is used, unless an output file is
given with a ".csv" extension.
© 2011 454 Life Sciences Corporation, a Roche Company.
For life science research only. Not for use in diagnostic procedures.
