1. GS Amplicon Variant Analyzer Application
:
1.7 The Consensus Align Tab
: 1.7.1 Populating the Consensus Align tab
1.7.1
Populating the Consensus Align tab
When you open an Amplicon Project in the AVA software, the Consensus Align tab has no content and is grayed-out. To populate it, go to the Global Align tab, make sure that its Read Type control is set to “Consensus”, and right-click on the consensus whose reads you want to explore in detail. A contextual menu will appear which will include an “Open Consensus” option. Selecting this option will populate the Consensus Align tab with the multi-alignment of the reads that are grouped in the consensus on which you right-clicked.
Since the purpose of the Consensus Align tab is to “drill down” on the reads of a given consensus, as opposed to viewing data from the whole Project, it lacks the “Alignment data” controls that allow you to browse through all the alignments, on the Global Align tab (see section
1.6.4.1
). Also, since it always displays individual reads, it lacks the “Read Type” controls as well, that allow you to choose to display consensi or individual reads, on the Global Align tab (see section
1.6.4.2
).