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4. GS De Novo Assembler and GS Reference Mapper Appendices : 4.16 Types of Structural Rearrangements : 4.16.4 Inversion
4.16.4
Inversion
Inversions can be supported by both Paired End and shotgun reads. Only one subject is involved, and two positions are given for the start and end.
Example output:
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INVERSION
SubjAccno     SubjPos1     RegionName1     SubjPos2    RegionName2  Length  Confidence
nebCjejuniGold-1.seq    148715          239878          91163   High
 
 
59 mate pairs inverted, 5' to 5', coverage = 59, frequency = 100.00
From position 147691 to position 238819
+84129  2
+84923  1
+85717  7
+86511  6
+87305  13
+88099  8
+88893  15
+89687  4
+90481  2
+91275  1
 
 
68 mate pairs inverted, 3' to 3', coverage = 68, frequency = 94.44
From position 148715 to position 239878
+84266  2
+85039  3
+85812  10
+86585  12
+87358  10
+88131  13
+88904  10
+89677  6
+90450  0
+91223  2
 
 
Individual Variation IDs: 32, 33
 
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