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4. GS De Novo Assembler and GS Reference Mapper Appendices : 4.16 Types of Structural Rearrangements : 4.16.2 Insertion
4.16.2
Insertion
Insertions involve only one position on one subject. In this example, the insertion is supported only by shotgun reads.
Example output:
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INSERTION
subjAccno       SubjPos RegionName      Length  Confidence
gi|6322016|ref|NC_001141.1|     275943          -       High
 
Consensus: gi|6322016|ref|          275907+ 
TTAAGTGATGAAAAGGCTTTTGAACCCAAATCACACTTGGCCTGTATCTTGGGAGGATTGTGCAACTCGTACG 275979
                                                                     *
# supporting shotgun reads, pos 275943: 53
# non-supporting shotgun reads, pos 275943: 0
 
 
Individual Variation IDs: 267, 268
 
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