4. GS De Novo Assembler and GS Reference Mapper Appendices
: 4.16 Types of Structural Rearrangements
4.16
Types of Structural Rearrangements
4.16.1 Deletion
4.16.2 Insertion
4.16.3 Substitution
4.16.4 Inversion
4.16.5 Duplication, Tandem (May or May Not Be Inverted)
4.16.6 Duplication, Interspersed (May or May Not Be Inverted)
4.16.7 Translocation (May or May Not Be Inverted)
4.16.8 Fusion
4.16.9 Exon Splice
There are twelve types of rearrangements that may be included in the output files 454HCStructRearrangements.txt and 454AllStructRearrangements.txt: deletions, insertions, substitutions, inversions, tandem duplications, interspersed duplications, translocations, fusions, and exon splices. Tandem duplications, interspersed duplications, and translocations can also be inverted, making the last three rearrangement types. Details for each are given below.
