4. GS De Novo Assembler and GS Reference Mapper Appendices
: 4.5 Mutually Exclusive Options for Assembly and Mapping Commands
4.5
Mutually Exclusive Options for Assembly and Mapping Commands
Mutually exclusive options of the assembly and mapping CLI commands are:
•
-no or –nobig
with
–ace, -acedir, -consed, -pair, -pairt
•
-ace, -acedir, -noace, -consed
•
-ar, -at
•
-a #, -g
•
-annot, -noannot
•
-nimblegen (-n), -nonimblegen (-non)
•
-pair (-p), -pairt (-pt)
•
-reg #, -noreg
•
-sio, -siom, -siod, -nosio
•
-snp, -nosnp
•
-trim, -notrim
•
-v, -nov
•
-vs, -novs
•
-vt, -novt
