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1. GS De Novo Assembler : 1.7 Customize Project with the Parameters Tab : 1.7.5 cDNA Project Output Sub-Tab
1.7.5
cDNA Project Output Sub-Tab
The cDNA Assembly project parameters (Figure 16) on the Output sub-tab are the same as those of Genomic Assembly projects (Section 1.7.3) with the exceptions noted below.
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cDNA Assembly projects have options to specify the isotig and isogroup thresholds, as well as isotig count and isogroup count thresholds. (See 1.14 for a description of these thresholds.)
Figure 16: gsAssembler Parameters tab, Output sub-tab, bottom-left corner, showing the Isotig and Isogroup fields specific to cDNA projects
The third sub-tab of the Parameters tab – Computation – is identical for Genomic and cDNA projects.