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GS Run Processor
Data Processing Pipelines
Image Processing
Launching the image processing pipeline
Image Processing Output
Signal Processing
Launching the signal processing pipeline
Signal Processing Output
Signal Processing Filters
Signal Filters and Corrections
Read rejecting filters
Read Trimming Filters
Adjustable Signal Processing Filter Parameters
GS Reporter
gsReporter Executable
GS Reporter output
GS Reporter Metrics Files
GS Reporter FNA and QUAL Files
Organization of a Data Processing Directory
GS Run Browser
Launching the GS Run Browser
Opening a Data Set
Overview of the GS Run Browser Interface
The Global Action Area Buttons
The Tabs
The Buttons and Plots
The Navigation and Data Capture Buttons
The Mouse Functions
The Overview Tab
Sequencing Run Area
Run Processor Results Area
Run Processor Manager
The Wells Tab
Wells Tab Features and Functionalities
Well Flowgrams (for Wells Generating Library Reads)
Well Tri-Flowgrams (for Wells Generating Control DNA Reads)
Location Flowgrams
Subtraction Raw Flowgrams
The Signals Tab
Signals Tab Features and Functionalities
The Reads Tab
Reads Tab Features and Functionalities
The Control DNA Tab
Control DNA Tab Features and Functionalities
Control DNA Consensus Flowgrams
The Filters Tab
The Filters Tab Features and Functionalities
GS Support Tool
Data Management Topics
backupScript.sh
post-analysis script
GS Run Processor Appendices
gsRunProcessor executable
startGsProcessor script
GS Run Processor Manager
GS Run Processor Log Files - gsRunProcessor.log and gsRunProcessor_err.log
GS Reporter Metric File Contents Descriptions
Phred-equivalent Base Quality Scores
GS Run Browser Appendices
Control DNA Keys and Sequences for the Different Chemistries
Titration Runs Calculations for Older Chemistries
Glossary