The Filters Tab Features and Functionalities

3.9.1

The Filter tab contains the features with the functionalities described below (see Figure 41):

•	The Options area (on the top left area of the tab):

◦	Well Categories: choice of reads to display:

▪	GACT (rapid library) TCAG (standard library), or

▪	CATG and/or ATGC (control) - see Section 7.1 for details on Control DNA keys

•

Navigation and data capture buttons: All the buttons on this tab have common functions: setting and adjusting the zoom level of the main image display or allowing the user to save the data as a text file or snapshot image. See Section 3.3.4 for a description of the navigation and data capture button functions.

•	Plot display:

◦	The plot shows the number of reads that passed all filters and the number of reads that failed either the dot or the mixed filter (or both); these data are calculated as a percentage of key pass reads, for the sequencing key selected.

◦	The plot shares the common scrolling and zooming functions of the GS Run Browser plots. See Section 3.3.3 for a description of the plot functions.

◦	When the mouse pointer is over the plot, the usual mouse tracker shows the x-axis value, and the % of reads in the selected well category that passed all filters and that failed the dot and/or mixed filters, in the region under the pointer or averaged over the entire PTP Device.

•

Summary:

◦	The Summary area shows all filter data, per PicoTiterPlate Device region and in aggregate, including:

▪	Number of Raw Wells

▪	Then, for the key selected, the number of reads that:

▫	passed key

▫	failed each filter

▫	passed all filters

▪	and, for the key selected, the percentage of key pass reads that:

▫	failed either or both the “dot” or the “mixed” filters (combined)

▫	failed either or both of the “short” filters (combined)

▫	passed all filters