ó ‡ˆ\c@sdZddlmZddlZddlmZmZddlmZddlZ ddl m Z ddl m Z dd l mZdd lmZdd lmZdd lmZmZdd lmZd„Zdddd„Zdejeee ƒfd„ƒYZdS(sBase class for mixture models.iÿÿÿÿ(tprint_functionN(tABCMetatabstractmethod(ttimei(tcluster(t BaseEstimator(t DensityMixin(tsix(tConvergenceWarning(t check_arraytcheck_random_state(t logsumexpcCsAtj|ƒ}|j|kr=td|||jfƒ‚ndS(s”Validate the shape of the input parameter 'param'. Parameters ---------- param : array param_shape : tuple name : string s:The parameter '%s' should have the shape of %s, but got %sN(tnptarraytshapet ValueError(tparamt param_shapetname((s3lib/python2.7/site-packages/sklearn/mixture/base.pyt _check_shapes icCs¦t|dtjtjgd|ƒ}|dk rc|jd|krctd||jdfƒ‚n|dk r¢|jd|kr¢td||jdfƒ‚n|S(sËCheck the input data X. Parameters ---------- X : array-like, shape (n_samples, n_features) n_components : int Returns ------- X : array, shape (n_samples, n_features) tdtypetensure_min_samplesisLExpected n_samples >= n_components but got n_components = %d, n_samples = %dis?Expected the input data X have %d features, but got %d featuresN(R R tfloat64tfloat32tNoneRR(tXt n_componentst n_featuresR((s3lib/python2.7/site-packages/sklearn/mixture/base.pyt_check_X)s  t BaseMixturecBs"eZdZd„Zd„Zed„ƒZd„Zed„ƒZdd„Z dd„Z d„Z ed „ƒZ ed „ƒZed „ƒZed „ƒZd „Zdd„Zd„Zd„Zdd„Zd„Zed„ƒZed„ƒZd„Zd„Zd„Zd„ZRS(s¥Base class for mixture models. This abstract class specifies an interface for all mixture classes and provides basic common methods for mixture models. c Cs^||_||_||_||_||_||_||_||_| |_| |_ dS(N( Rttolt reg_covartmax_itertn_initt init_paramst random_statet warm_starttverbosetverbose_interval( tselfRRRR R!R"R#R$R%R&((s3lib/python2.7/site-packages/sklearn/mixture/base.pyt__init__Js         cCsÊ|jdkr%td|jƒ‚n|jdkrJtd|jƒ‚n|jdkrotd|jƒ‚n|jdkr”td|jƒ‚n|jdkr¹td|jƒ‚n|j|ƒdS( s‹Check values of the basic parameters. Parameters ---------- X : array-like, shape (n_samples, n_features) isOInvalid value for 'n_components': %d Estimation requires at least one componentgsKInvalid value for 'tol': %.5f Tolerance used by the EM must be non-negativesCInvalid value for 'n_init': %d Estimation requires at least one runsKInvalid value for 'max_iter': %d Estimation requires at least one iterationsUInvalid value for 'reg_covar': %.5f regularization on covariance must be non-negativeN(RRRR!R Rt_check_parameters(R'R((s3lib/python2.7/site-packages/sklearn/mixture/base.pyt_check_initial_parametersXs cCsdS(s•Check initial parameters of the derived class. Parameters ---------- X : array-like, shape (n_samples, n_features) N((R'R((s3lib/python2.7/site-packages/sklearn/mixture/base.pyR)|scCsö|j\}}|jdkrtj||jfƒ}tjd|jddd|ƒj|ƒj}d|tj |ƒ|ftdo_initR!tmax_lower_boundR#R8R9tinitt lower_boundtn_itertprev_lower_boundt log_prob_normtlog_resptchanget best_paramst best_n_iter((s3lib/python2.7/site-packages/sklearn/mixture/base.pyR=ÅsJ                cCs(|j|ƒ\}}tj|ƒ|fS(s¶E step. Parameters ---------- X : array-like, shape (n_samples, n_features) Returns ------- log_prob_norm : float Mean of the logarithms of the probabilities of each sample in X log_responsibility : array, shape (n_samples, n_components) Logarithm of the posterior probabilities (or responsibilities) of the point of each sample in X. (t_estimate_log_prob_respR tmean(R'RRYRZ((s3lib/python2.7/site-packages/sklearn/mixture/base.pyRFscCsdS(s&M step. Parameters ---------- X : array-like, shape (n_samples, n_features) log_resp : array-like, shape (n_samples, n_components) Logarithm of the posterior probabilities (or responsibilities) of the point of each sample in X. N((R'RRZ((s3lib/python2.7/site-packages/sklearn/mixture/base.pyRG,s cCsdS(N((R'((s3lib/python2.7/site-packages/sklearn/mixture/base.pyt_check_is_fitted:scCsdS(N((R'((s3lib/python2.7/site-packages/sklearn/mixture/base.pyRM>scCsdS(N((R'tparams((s3lib/python2.7/site-packages/sklearn/mixture/base.pyRPBscCs?|jƒt|d|jjdƒ}t|j|ƒddƒS(s“Compute the weighted log probabilities for each sample. Parameters ---------- X : array-like, shape (n_samples, n_features) List of n_features-dimensional data points. Each row corresponds to a single data point. Returns ------- log_prob : array, shape (n_samples,) Log probabilities of each data point in X. iR.N(R`RRtmeans_RR t_estimate_weighted_log_prob(R'R((s3lib/python2.7/site-packages/sklearn/mixture/base.pyt score_samplesFs cCs|j|ƒjƒS(s—Compute the per-sample average log-likelihood of the given data X. Parameters ---------- X : array-like, shape (n_samples, n_dimensions) List of n_features-dimensional data points. Each row corresponds to a single data point. Returns ------- log_likelihood : float Log likelihood of the Gaussian mixture given X. (RdR_(R'RR>((s3lib/python2.7/site-packages/sklearn/mixture/base.pytscoreYscCs?|jƒt|d|jjdƒ}|j|ƒjddƒS(s‚Predict the labels for the data samples in X using trained model. Parameters ---------- X : array-like, shape (n_samples, n_features) List of n_features-dimensional data points. Each row corresponds to a single data point. Returns ------- labels : array, shape (n_samples,) Component labels. iR.N(R`RRRbRRcRR(R'R((s3lib/python2.7/site-packages/sklearn/mixture/base.pytpredictis cCsH|jƒt|d|jjdƒ}|j|ƒ\}}tj|ƒS(sÓPredict posterior probability of each component given the data. Parameters ---------- X : array-like, shape (n_samples, n_features) List of n_features-dimensional data points. Each row corresponds to a single data point. Returns ------- resp : array, shape (n_samples, n_components) Returns the probability each Gaussian (state) in the model given each sample. iN(R`RRRbRR^R texp(R'RR9RZ((s3lib/python2.7/site-packages/sklearn/mixture/base.pyt predict_proba{s ic CsÈ|jƒ|dkr,td|jƒ‚n|jj\}}t|jƒ}|j||jƒ}|j dkrÆt j gt |j|j |ƒD]*\}}}|j||t|ƒƒ^qƒ} n¸|j dkr$t j gt |j|ƒD]*\}}|j||j t|ƒƒ^qîƒ} nZt j gt |j|j |ƒD]2\}}}||j||ƒt j|ƒ^qCƒ} t jgt|ƒD]$\} }t j|| dtƒ^q‘ƒ} | | fS(s†Generate random samples from the fitted Gaussian distribution. Parameters ---------- n_samples : int, optional Number of samples to generate. Defaults to 1. Returns ------- X : array, shape (n_samples, n_features) Randomly generated sample y : array, shape (nsamples,) Component labels isNInvalid value for 'n_samples': %d . The sampling requires at least one sample.tfullttiedR(R`RRRbRR R#t multinomialtweights_tcovariance_typeR tvstacktzipt covariances_tmultivariate_normaltinttrandntsqrtt concatenatet enumerateRi( R'R8R9Rtrngtn_samples_compR_t covariancetsampleRtjR>((s3lib/python2.7/site-packages/sklearn/mixture/base.pyRzs2  ICN 7cCs|j|ƒ|jƒS(s Estimate the weighted log-probabilities, log P(X | Z) + log weights. Parameters ---------- X : array-like, shape (n_samples, n_features) Returns ------- weighted_log_prob : array, shape (n_samples, n_component) (t_estimate_log_probt_estimate_log_weights(R'R((s3lib/python2.7/site-packages/sklearn/mixture/base.pyRcÀs cCsdS(sŸEstimate log-weights in EM algorithm, E[ log pi ] in VB algorithm. Returns ------- log_weight : array, shape (n_components, ) N((R'((s3lib/python2.7/site-packages/sklearn/mixture/base.pyR}ÍscCsdS(s7Estimate the log-probabilities log P(X | Z). Compute the log-probabilities per each component for each sample. Parameters ---------- X : array-like, shape (n_samples, n_features) Returns ------- log_prob : array, shape (n_samples, n_component) N((R'R((s3lib/python2.7/site-packages/sklearn/mixture/base.pyR|×scCsa|j|ƒ}t|ddƒ}tjddƒ"||dd…tjf}WdQX||fS(s>Estimate log probabilities and responsibilities for each sample. Compute the log probabilities, weighted log probabilities per component and responsibilities for each sample in X with respect to the current state of the model. Parameters ---------- X : array-like, shape (n_samples, n_features) Returns ------- log_prob_norm : array, shape (n_samples,) log p(X) log_responsibilities : array, shape (n_samples, n_components) logarithm of the responsibilities R.itundertignoreN(RcR R terrstateR6(R'Rtweighted_log_probRYRZ((s3lib/python2.7/site-packages/sklearn/mixture/base.pyR^çs #cCs\|jdkr td|ƒn8|jdkrXtd|ƒtƒ|_|j|_ndS(s(Print verbose message on initialization.isInitialization %diN(R%tprintRt_init_prev_timet_iter_prev_time(R'R!((s3lib/python2.7/site-packages/sklearn/mixture/base.pyRDs  cCs|||jdkrx|jdkr3td|ƒqx|jdkrxtƒ}td|||j|fƒ||_qxndS(s(Print verbose message on initialization.iis Iteration %dis0 Iteration %d time lapse %.5fs ll change %.5fN(R&R%R‚RR„(R'RWtdiff_lltcur_time((s3lib/python2.7/site-packages/sklearn/mixture/base.pyRI s cCs]|jdkr#td|jƒn6|jdkrYtd|jtƒ|j|fƒndS(s.Print verbose message on the end of iteration.isInitialization converged: %sis7Initialization converged: %s time lapse %.5fs ll %.5fN(R%R‚R?RRƒ(R'tll((s3lib/python2.7/site-packages/sklearn/mixture/base.pyRLs N(t__name__t __module__t__doc__R(R*RR)R<R7RR1R=RFRGR`RMRPRdReRfRhRzRcR}R|R^RDRIRL(((s3lib/python2.7/site-packages/sklearn/mixture/base.pyRCs2  $   T      1    (RŠt __future__RRNtabcRRRtnumpyR tRtbaseRRt externalsRt exceptionsRtutilsR R t utils.fixesR RRRtwith_metaclassR(((s3lib/python2.7/site-packages/sklearn/mixture/base.pyts