@K7]c@`sdZddlmZmZmZddlZddlZddlmZddl m Z m Z m Z m Z ddlmZmZmZmZmZmZmZmZmZmZddlZddlZddlZddlZddlZddlZddlZddl Z yddl m!Z"Wn!e#k rIddl m"Z"nXdd l$m%Z%m&Z&dd l'm(Z(dd l)m*Z*m+Z+m,Z,m-Z-dd l.m/Z/m0Z0dd l1m2Z2m3Z3ddl4m5Z5m6Z6dZ7dZ8dZ9dZ:dZ;dZ<dZ=dZ>dZ?dZ@dddddddd d!d"d#d$d%d&d'd(d)d*d+d,gZAd-d.d/d0d1d2d3d4d5d6d7d8d9d:fZBd;d<d=d>d?d@dAdBdCdDdEdFdGdHdIfZCejDdJZEidKdL6dMdN6dOdP6dQdR6dSdT6dUdV6ZFdWZGdXZHdYZIdZZJd[ZKd\ZLd]ZMd^ZNd_ZOePd`ZQePdaZReSdbZTdcZUddZVdeZWdfZXdgdheYeYeYeYeSePeSdhdieYeSdjeSeYeYdkZZdlZ[fdmZ\fdnZ]doZ^dpZ_dS(qs6 Tools for converting Cran packages to conda recipes. i(tabsolute_importtdivisiontprint_functionN(tchain(tmakedirstlistdirtseptenviron( tbasenamet commonprefixtexiststisabstisdirtisfiletjointnormpathtrealpathtrelpath(t CSafeDumper(t SafeDumper(tsourcetmetadata(tget_or_merge_config(t text_typet iteritemstTemporaryDirectorytcc_conda_build(tallowed_license_familiestguess_license_family(trm_rft ensure_list(tget_package_variantstDEFAULT_VARIANTSsQ {archive_keys} {git_url_key} {git_url} {git_tag_key} {git_tag} {patches} s* url: {cranurl}{sel} {hash_entry}{sel} s+{{% set version = '{cran_version}' %}}{sel}sV{version_source} {version_binary1} {version_binary2} {{% set posix = 'm2-' if win else '' %}} {{% set native = 'm2w64-' if win else '' %}} package: name: {packagename} version: {{{{ version|replace("-", "_") }}}} source: {source} {binary1} {binary2} build: merge_build_host: True{sel_src_and_win} # If this is a new build for the same version, increment the build number. number: {build_number} {noarch_generic} # This is required to make R link correctly on Linux. rpaths: - lib/R/lib/ - lib/ {script_env} {suggests} requirements: build:{build_depends} host:{host_depends} run:{run_depends} test: commands: # You can put additional test commands to be run here. - $R -e "library('{cran_packagename}')" # [not win] - "\"%R%\" -e \"library('{cran_packagename}')\"" # [win] # You can also put a file called run_test.py, run_test.sh, or run_test.bat # in the recipe that will be run at test time. # requires: # Put any additional test requirements here. about: {home_comment}home:{homeurl} license: {license} {summary_comment}summary:{summary} license_family: {license_family} {license_file} {extra_recipe_maintainers} # The original CRAN metadata for this package was: {cran_metadata} # See # https://docs.conda.io/projects/conda-build for # more information about meta.yaml s'#!/bin/bash # 'Autobrew' is being used by more and more packages these days # to grab static libraries from Homebrew bottles. These bottles # are fetched via Homebrew's --force-bottle option which grabs # a bottle for the build machine which may not be macOS 10.9. # Also, we want to use conda packages (and shared libraries) for # these 'system' dependencies. See: # https://github.com/jeroen/autobrew/issues/3 export DISABLE_AUTOBREW=1 # R refuses to build packages that mark themselves as Priority: Recommended mv DESCRIPTION DESCRIPTION.old grep -va '^Priority: ' DESCRIPTION.old > DESCRIPTION $R CMD INSTALL --build . # Add more build steps here, if they are necessary. # See # https://docs.conda.io/projects/conda-build # for a list of environment variables that are set during the build process. s #!/bin/bash if {source_pf_bash}; then export DISABLE_AUTOBREW=1 mv DESCRIPTION DESCRIPTION.old grep -v '^Priority: ' DESCRIPTION.old > DESCRIPTION $R CMD INSTALL --build . else mkdir -p $PREFIX/lib/R/library/{cran_packagename} mv * $PREFIX/lib/R/library/{cran_packagename} if [[ $target_platform == osx-64 ]]; then pushd $PREFIX for libdir in lib/R/lib lib/R/modules lib/R/library lib/R/bin/exec sysroot/usr/lib; do pushd $libdir || exit 1 for SHARED_LIB in $(find . -type f -iname "*.dylib" -or -iname "*.so" -or -iname "R"); do echo "fixing SHARED_LIB $SHARED_LIB" install_name_tool -change /Library/Frameworks/R.framework/Versions/3.5.0-MRO/Resources/lib/libR.dylib "$PREFIX"/lib/R/lib/libR.dylib $SHARED_LIB || true install_name_tool -change /Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libR.dylib "$PREFIX"/lib/R/lib/libR.dylib $SHARED_LIB || true install_name_tool -change /usr/local/clang4/lib/libomp.dylib "$PREFIX"/lib/libomp.dylib $SHARED_LIB || true install_name_tool -change /usr/local/gfortran/lib/libgfortran.3.dylib "$PREFIX"/lib/libgfortran.3.dylib $SHARED_LIB || true install_name_tool -change /Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libquadmath.0.dylib "$PREFIX"/lib/libquadmath.0.dylib $SHARED_LIB || true install_name_tool -change /usr/local/gfortran/lib/libquadmath.0.dylib "$PREFIX"/lib/libquadmath.0.dylib $SHARED_LIB || true install_name_tool -change /Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libgfortran.3.dylib "$PREFIX"/lib/libgfortran.3.dylib $SHARED_LIB || true install_name_tool -change /usr/lib/libgcc_s.1.dylib "$PREFIX"/lib/libgcc_s.1.dylib $SHARED_LIB || true install_name_tool -change /usr/lib/libiconv.2.dylib "$PREFIX"/sysroot/usr/lib/libiconv.2.dylib $SHARED_LIB || true install_name_tool -change /usr/lib/libncurses.5.4.dylib "$PREFIX"/sysroot/usr/lib/libncurses.5.4.dylib $SHARED_LIB || true install_name_tool -change /usr/lib/libicucore.A.dylib "$PREFIX"/sysroot/usr/lib/libicucore.A.dylib $SHARED_LIB || true install_name_tool -change /usr/lib/libexpat.1.dylib "$PREFIX"/lib/libexpat.1.dylib $SHARED_LIB || true install_name_tool -change /usr/lib/libcurl.4.dylib "$PREFIX"/lib/libcurl.4.dylib $SHARED_LIB || true install_name_tool -change /usr/lib/libc++.1.dylib "$PREFIX"/lib/libc++.1.dylib $SHARED_LIB || true install_name_tool -change /Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libc++.1.dylib "$PREFIX"/lib/libc++.1.dylib $SHARED_LIB || true done popd done popd fi fi so#!/bin/bash mkdir -p $PREFIX/lib/R/library/{cran_packagename} mv * $PREFIX/lib/R/library/{cran_packagename} fi s9"%R%" CMD INSTALL --build . IF %ERRORLEVEL% NEQ 0 exit 1 sif "%target_platform%" == "win-64" goto skip_source_build "%R%" CMD INSTALL --build . IF %ERRORLEVEL% NEQ 0 exit 1 exit 0 :skip_source_build mkdir %PREFIX%\lib\R\library robocopy /E . "%PREFIX%\lib\R\library\{cran_packagename}" if %ERRORLEVEL% NEQ 1 exit 1 exit 0 s - tSitetArchstDependstEnhancestImportstLicensetLicense_is_FOSStLicense_restricts_uset LinkingTotMD5sumtNeedsCompilationtOS_typetPackagetPathtPrioritytSuggeststVersiontTitletAuthort Maintainertbasetcompilertdatasetstgraphicst grDevicestgridtmethodstparalleltsplineststatststats4ttcltkttoolstutilstMASStlatticetMatrixtnlmetsurvivaltboottclustert codetoolstforeignt KernSmoothtrparttclasstnnettspatialtmgcvs^\s*(?P[a-zA-Z0-9.+\-]{1,})(\s*\(\s*(?P[>=<]+)\s*(?P[0-9a-zA-Z:\-+~.]+)\s*\))?(\s*\[(?P[\s!\w\-]+)\])?\s*$s =~ linux.*tlinuxs == linux-32tlinux32s == linux-64tlinux64s == win-32twin32s == win-64twin64s == osx-64tosxcC`stS(N(tTrue(t package_name((s9lib/python2.7/site-packages/conda_build/skeletons/cran.pytpackage_exists sc C`s|jddddtj}|jddddd|jd dd d d |jd ddd d|jddd|jddd|jddd|jddddd|jddd|jdd ddd|jddd |jd!d"dFd d#dd(|jd)ddd*d+dd,|jd-dddd.|jd/dddd0|jd1dd2d*d3dd4|jd5dd2d*d6dd7|jd8dddd9|jd:dd;d"dGd d'ddA|jdBdCd tjdDdddEdS(HNtcranthelps Create recipe skeleton for packages hosted on the Comprehensive R Archive Network (CRAN) (cran.r-project.org). tformatter_classtpackagestnargst+s-CRAN packages to create recipe skeletons for.s --output-dirs5Directory to write recipes to (default: %(default)s).tdefaultt.s--output-suffixsLSuffix to add to recipe dir, can contain other dirs (eg: -feedstock/recipe).ts--add-maintainers@Add this github username as a maintainer if not already present.s --versions(Version to use. 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   &(  &$ "              "                )                           !!          6 +            4 4 4        1 1+14      %            ""   %"4cC`sYtj|}|j}t|}td||ftd||f||kS(Ns#Local recipe for %s has version %s.s!The version on CRAN for %s is %s.(RRR#RR(t recipe_dirtnewest_conda_versionRt local_versionR((s9lib/python2.7/site-packages/conda_build/skeletons/cran.pyR9s   cC`sg}t|}x|D]}|jd st| rBqn|d}|rq||kpg||k rqqn||krtd|qntt||||djddtd||j|qW|S(Nsr-isSkipping %s, not found on CRANR1R%Rs Updating %s(RRR RRRRR(RR>R^t to_updatetrecipestrecipet recipe_name((s9lib/python2.7/site-packages/conda_build/skeletons/cran.pyt get_outdatedEs     cC`sg}t|}xm|D]e}|jd st| rBqn|d}|rq||kpg||k rqqn|j|qW|S(Nsr-i(RRR R(RR>R^texistingRRR((s9lib/python2.7/site-packages/conda_build/skeletons/cran.pyt get_existing^s   cC`st|\}}}}|d}|s&tSd|kr6tS||krFtS|j||djddkrptStS(Nis github.comR1R%R(RR#RRX(R>Rt r_pkg_nameRRRt cran_pkg_name((s9lib/python2.7/site-packages/conda_build/skeletons/cran.pyRps   &cC`siddddgd6ddgd6d d d gd 6d ddddgd6ddgd6ddgd6ddddgd6}d}xH|jD]4}|||kr|jd||d }PqqWd!}|S("s Most R packages on CRAN do not include a license file. 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