Microsatellite locus Linkage map chromosome (Hickner et al. 2013) Linkage map position, cM (Hickner et al. 2013) CpipJ1 scaffold Start position on CpipJ1 supercontig End position on CpipJ1 scaffold C660CTC1 chr1 10.4 supercont3.660 210132 210132 C660GTG1 chr1 10.4 supercont3.660 200646 200646 C143TGC1 chr1 11 supercont3.143 391127 391127 C47GA1 chr1 13.7 supercont3.47 1313771 1313771 C56GCA1 chr1 13.7 supercont3.56 973937 973937 C56TGT1 chr1 13.7 supercont3.56 918098 918098 C134AC1b chr1 13.7 supercont3.134 30425 30425 C213CGA1 chr1 14 supercont3.213 601247 601247 C213CA1 chr1 14 supercont3.213 133631 133631 C60CTG1 chr1 14 supercont3.60 404126 404126 C104TTC1 chr1 14 supercont3.104 918077 918077 C36GTT1 chr1 15.7 supercont3.36 1303951 1303951 C198TCG1 chr1 21.9 supercont3.198 515329 515329 C12GTT1 chr1 29.5 supercont3.12 1558138 1558138 C12CCT1 chr1 29.5 supercont3.12 837313 837313 C12GTC1 chr1 29.5 supercont3.12 268913 268913 C32AG1 chr2 0 supercont3.32 1155450 1155450 C32TGC1 chr2 0 supercont3.32 787639 787639 C32TC1b chr2 0 supercont3.32 266744 266744 C13TC1 chr2 6.2 supercont3.13 1640955 1640955 C68TCG1 chr2 7.5 supercont3.68 253604 253604 C28GT1 chr2 12.4 supercont3.28 341223 341223 C139GA1 chr2 17.4 supercont3.139 714439 714439 C139CT1 chr2 17.4 supercont3.139 744116 744116 C474GGA1 chr2 21.3 supercont3.474 209783 209783 C4TTG1 chr2 25.3 supercont3.4 1045226 1045226 C99GTC1 chr2 27.2 supercont3.99 355499 355499 C5CGT1 chr2 31.6 supercont3.5 1002522 1002522 C175TC1 chr2 35.6 supercont3.175 379530 379530 C95CAG1 chr2 38.9 supercont3.95 317088 317088 C95GCA1 chr2 38.9 supercont3.95 620572 620572 C41GTC1 chr2 43.2 supercont3.41 626448 626448 C129CT1 chr2 51.7 supercont3.129 381523 381523 C67GT1 chr2 51.9 supercont3.67 306039 306039 C280CGT1 chr2 64.3 supercont3.280 190861 190861 C66CGT1 chr2 65.4 supercont3.66 495995 495995 C66TGT1 chr2 65.4 supercont3.66 483175 483175 C66GT1 chr2 65.4 supercont3.66 427138 427138 C108CAG1 chr2 75.8 supercont3.108 416025 416025 C177CGT1 chr2 80 supercont3.177 457894 457894 C186TGT1 chr2 88.8 supercont3.186 310769 310769 C21TTG1 chr3 0 supercont3.21 1283628 1283628 C3TGC1 chr3 1.9 supercont3.3 1813235 1813235 C3GAC1 chr3 1.9 supercont3.3 2527292 2527292 C2ACG1 chr3 5.1 supercont3.2 1646608 1646608 C38GCT1 chr3 7.1 supercont3.38 581278 581278 C38AC1 chr3 7.1 supercont3.38 1236529 1236529 C309TGC1 chr3 17.5 supercont3.309 473636 473636 C309ACG1 chr3 17.5 supercont3.309 388483 388483 C205GAC1 chr3 22.3 supercont3.205 100114 100114 C205GTC1 chr3 22.3 supercont3.205 282319 282319 C45GCT1 chr3 30.5 supercont3.45 1118880 1118880 C45AG1 chr3 30.5 supercont3.45 444156 444156 C73TCG1 chr3 32.1 supercont3.73 1014826 1014826 C73CA1 chr3 32.1 supercont3.73 1034749 1034749 C5GTG1 chr3 39.6 supercont3.5 482818 482818 C1CAG1 chr3 40 supercont3.1 645288 645288 C65CAG1 chr3 42.2 supercont3.65 594671 594671 C550TGC1 chr3 48.4 supercont3.550 94189 94189 C163CAG1 chr3 51.3 supercont3.163 163335 163335 C119TGG1 chr3 53.6 supercont3.119 102604 102604 C446TC1 chr3 55.6 supercont3.446 303054 303054 C1500CAG1 chr3 57.3 supercont3.1500 38249 38249 C208GCA1 chr3 59.5 supercont3.208 278321 278321 C185CAG1 chr3 65.6 supercont3.185 232381 232381