Rscript ~/code/spp/spp_package/run_spp.R -c=Nac_ammonia_1.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=Nac_ammonia_1.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=Nac_ammonia_2.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=Nac_ammonia_2.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=Nac_cytidine_1.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=Nac_cytidine_1.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=Nac_cytidine_2.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=Nac_cytidine_2.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=Nac_cytosine_1.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=Nac_cytosine_1.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=Nac_cytosine_2.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=Nac_cytosine_2.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=Nac_glutamine_1.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=Nac_glutamine_1.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=Nac_glutamine_2.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=Nac_glutamine_2.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=NtrC_ammonia_1.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=NtrC_ammonia_1.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=NtrC_ammonia_2.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=NtrC_ammonia_2.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=NtrC_cytidine_1.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=NtrC_cytidine_1.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=NtrC_cytidine_2.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=NtrC_cytidine_2.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=NtrC_cytosine_1.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=NtrC_cytosine_1.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=NtrC_cytosine_2.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=NtrC_cytosine_2.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=NtrC_glutamine_1.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=NtrC_glutamine_1.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=NtrC_glutamine_2.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=NtrC_glutamine_2.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=RpoD_ammonia_1.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=RpoD_ammonia_1.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=RpoD_ammonia_2.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=RpoD_ammonia_2.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=RpoD_cytidine_1.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=RpoD_cytidine_1.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=RpoD_cytidine_2.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=RpoD_cytidine_2.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=RpoD_cytosine_1.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=RpoD_cytosine_1.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=RpoD_cytosine_2.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=RpoD_cytosine_2.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=RpoD_glutamine_1.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=RpoD_glutamine_1.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=RpoD_glutamine_2.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=RpoD_glutamine_2.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=RpoN_ammonia_1.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=RpoN_ammonia_1.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=RpoN_ammonia_2.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=RpoN_ammonia_2.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=RpoN_cytidine_1.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=RpoN_cytidine_1.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=RpoN_cytidine_2.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=RpoN_cytidine_2.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=RpoN_cytosine_1.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=RpoN_cytosine_1.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=RpoN_cytosine_2.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=RpoN_cytosine_2.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=RpoN_glutamine_1.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=RpoN_glutamine_1.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=RpoN_glutamine_2.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=RpoN_glutamine_2.1x36mers.QC