zcat Nac_ammonia_1.fastq.gz | wc -l > Nac_ammonia_1.fastq.lines
zcat Nac_ammonia_2.fastq.gz | wc -l > Nac_ammonia_2.fastq.lines
zcat Nac_cytidine_1.fastq.gz | wc -l > Nac_cytidine_1.fastq.lines
zcat Nac_cytidine_2.fastq.gz | wc -l > Nac_cytidine_2.fastq.lines
zcat Nac_cytosine_1.fastq.gz | wc -l > Nac_cytosine_1.fastq.lines
zcat Nac_cytosine_2.fastq.gz | wc -l > Nac_cytosine_2.fastq.lines
zcat Nac_glutamine_1.fastq.gz | wc -l > Nac_glutamine_1.fastq.lines
zcat Nac_glutamine_2.fastq.gz | wc -l > Nac_glutamine_2.fastq.lines
zcat NtrC_ammonia_1.fastq.gz | wc -l > NtrC_ammonia_1.fastq.lines
zcat NtrC_ammonia_2.fastq.gz | wc -l > NtrC_ammonia_2.fastq.lines
zcat NtrC_cytidine_1.fastq.gz | wc -l > NtrC_cytidine_1.fastq.lines
zcat NtrC_cytidine_2.fastq.gz | wc -l > NtrC_cytidine_2.fastq.lines
zcat NtrC_cytosine_1.fastq.gz | wc -l > NtrC_cytosine_1.fastq.lines
zcat NtrC_cytosine_2.fastq.gz | wc -l > NtrC_cytosine_2.fastq.lines
zcat NtrC_glutamine_1.fastq.gz | wc -l > NtrC_glutamine_1.fastq.lines
zcat NtrC_glutamine_2.fastq.gz | wc -l > NtrC_glutamine_2.fastq.lines
zcat RpoD_ammonia_1.fastq.gz | wc -l > RpoD_ammonia_1.fastq.lines
zcat RpoD_ammonia_2.fastq.gz | wc -l > RpoD_ammonia_2.fastq.lines
zcat RpoD_cytidine_1.fastq.gz | wc -l > RpoD_cytidine_1.fastq.lines
zcat RpoD_cytidine_2.fastq.gz | wc -l > RpoD_cytidine_2.fastq.lines
zcat RpoD_cytosine_1.fastq.gz | wc -l > RpoD_cytosine_1.fastq.lines
zcat RpoD_cytosine_2.fastq.gz | wc -l > RpoD_cytosine_2.fastq.lines
zcat RpoD_glutamine_1.fastq.gz | wc -l > RpoD_glutamine_1.fastq.lines
zcat RpoD_glutamine_2.fastq.gz | wc -l > RpoD_glutamine_2.fastq.lines
zcat RpoN_ammonia_1.fastq.gz | wc -l > RpoN_ammonia_1.fastq.lines
zcat RpoN_ammonia_2.fastq.gz | wc -l > RpoN_ammonia_2.fastq.lines
zcat RpoN_cytidine_1.fastq.gz | wc -l > RpoN_cytidine_1.fastq.lines
zcat RpoN_cytidine_2.fastq.gz | wc -l > RpoN_cytidine_2.fastq.lines
zcat RpoN_cytosine_1.fastq.gz | wc -l > RpoN_cytosine_1.fastq.lines
zcat RpoN_cytosine_2.fastq.gz | wc -l > RpoN_cytosine_2.fastq.lines
zcat RpoN_glutamine_1.fastq.gz | wc -l > RpoN_glutamine_1.fastq.lines
zcat RpoN_glutamine_2.fastq.gz | wc -l > RpoN_glutamine_2.fastq.lines