Rscript ~/code/spp/spp_package/run_spp.R -c=Cra_acetate_1.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=Cra_acetate_1.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=Cra_acetate_2.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=Cra_acetate_2.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=Cra_fructose_1.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=Cra_fructose_1.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=Cra_fructose_2.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=Cra_fructose_2.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=Cra_glucose_1.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=Cra_glucose_1.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=Cra_glucose_2.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=Cra_glucose_2.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=RpoB_WT_1.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=RpoB_WT_1.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=RpoB_WT_2.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=RpoB_WT_2.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=RpoB_del_cra_1.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=RpoB_del_cra_1.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=RpoB_del_cra_2.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=RpoB_del_cra_2.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=RpoB_del_crp_1.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=RpoB_del_crp_1.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=RpoB_del_crp_2.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=RpoB_del_crp_2.1x36mers.QC