python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Cra_acetate_1.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/GCA_000005845.2_ASM584v2_genomic.chrom.sizes Cra_acetate_1.SE.a.plus.wig -notitle -RPM -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Cra_acetate_1.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/GCA_000005845.2_ASM584v2_genomic.chrom.sizes Cra_acetate_1.SE.a.minus.wig -notitle -RPM -uniqueBAM -stranded -
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Cra_acetate_2.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/GCA_000005845.2_ASM584v2_genomic.chrom.sizes Cra_acetate_2.SE.a.plus.wig -notitle -RPM -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Cra_acetate_2.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/GCA_000005845.2_ASM584v2_genomic.chrom.sizes Cra_acetate_2.SE.a.minus.wig -notitle -RPM -uniqueBAM -stranded -
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Cra_fructose_1.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/GCA_000005845.2_ASM584v2_genomic.chrom.sizes Cra_fructose_1.SE.a.plus.wig -notitle -RPM -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Cra_fructose_1.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/GCA_000005845.2_ASM584v2_genomic.chrom.sizes Cra_fructose_1.SE.a.minus.wig -notitle -RPM -uniqueBAM -stranded -
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Cra_fructose_2.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/GCA_000005845.2_ASM584v2_genomic.chrom.sizes Cra_fructose_2.SE.a.plus.wig -notitle -RPM -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Cra_fructose_2.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/GCA_000005845.2_ASM584v2_genomic.chrom.sizes Cra_fructose_2.SE.a.minus.wig -notitle -RPM -uniqueBAM -stranded -
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Cra_glucose_1.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/GCA_000005845.2_ASM584v2_genomic.chrom.sizes Cra_glucose_1.SE.a.plus.wig -notitle -RPM -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Cra_glucose_1.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/GCA_000005845.2_ASM584v2_genomic.chrom.sizes Cra_glucose_1.SE.a.minus.wig -notitle -RPM -uniqueBAM -stranded -
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Cra_glucose_2.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/GCA_000005845.2_ASM584v2_genomic.chrom.sizes Cra_glucose_2.SE.a.plus.wig -notitle -RPM -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Cra_glucose_2.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/GCA_000005845.2_ASM584v2_genomic.chrom.sizes Cra_glucose_2.SE.a.minus.wig -notitle -RPM -uniqueBAM -stranded -
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- RpoB_WT_1.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/GCA_000005845.2_ASM584v2_genomic.chrom.sizes RpoB_WT_1.SE.a.plus.wig -notitle -RPM -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- RpoB_WT_1.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/GCA_000005845.2_ASM584v2_genomic.chrom.sizes RpoB_WT_1.SE.a.minus.wig -notitle -RPM -uniqueBAM -stranded -
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- RpoB_WT_2.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/GCA_000005845.2_ASM584v2_genomic.chrom.sizes RpoB_WT_2.SE.a.plus.wig -notitle -RPM -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- RpoB_WT_2.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/GCA_000005845.2_ASM584v2_genomic.chrom.sizes RpoB_WT_2.SE.a.minus.wig -notitle -RPM -uniqueBAM -stranded -
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- RpoB_del_cra_1.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/GCA_000005845.2_ASM584v2_genomic.chrom.sizes RpoB_del_cra_1.SE.a.plus.wig -notitle -RPM -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- RpoB_del_cra_1.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/GCA_000005845.2_ASM584v2_genomic.chrom.sizes RpoB_del_cra_1.SE.a.minus.wig -notitle -RPM -uniqueBAM -stranded -
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- RpoB_del_cra_2.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/GCA_000005845.2_ASM584v2_genomic.chrom.sizes RpoB_del_cra_2.SE.a.plus.wig -notitle -RPM -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- RpoB_del_cra_2.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/GCA_000005845.2_ASM584v2_genomic.chrom.sizes RpoB_del_cra_2.SE.a.minus.wig -notitle -RPM -uniqueBAM -stranded -
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- RpoB_del_crp_1.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/GCA_000005845.2_ASM584v2_genomic.chrom.sizes RpoB_del_crp_1.SE.a.plus.wig -notitle -RPM -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- RpoB_del_crp_1.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/GCA_000005845.2_ASM584v2_genomic.chrom.sizes RpoB_del_crp_1.SE.a.minus.wig -notitle -RPM -uniqueBAM -stranded -
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- RpoB_del_crp_2.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/GCA_000005845.2_ASM584v2_genomic.chrom.sizes RpoB_del_crp_2.SE.a.plus.wig -notitle -RPM -uniqueBAM -stranded +
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- RpoB_del_crp_2.SE.a.bam /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2/GCA_000005845.2_ASM584v2_genomic.chrom.sizes RpoB_del_crp_2.SE.a.minus.wig -notitle -RPM -uniqueBAM -stranded -